Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1301 ATGGACGCTCCCCTGCTGCTGGTGAACGGCGAGGGGGCGGCGCTGGTGGCGGAGAATGGTGACTACGTGGCGGTGAGGGAGCTGAAGGAGGTGAAGAAGGTGTTTTGGATTGAGACCAAGAGAGTGTGGGAGATTGCGATGCCCATCGTTTTCAACATATGGTGTCAGTTCGGTGTCAACTCCGTCACCAGCATGTTCGTTGGACACCTCGGCGACATTCAGCTCTCTGCTATCTCTCTCATTAACTCCGTCATTGGCACTTTTGCCTTTGGTTTCATGCTTGGGATGGGGAGTGCAACTGAGACACTCTGTGGACAAGCTTTCGGAGCTGGGCAGGTTAATATGCTTGGTGTTTATATGCAACGCTCATGGGTGATATTATCGGTGACCAGTATCTTGCTCTTGCCTATATACATTTTTGCCGCTCCAATTTTGAAGCTTCTTGGTCAACAGGAAGATATAGCTGATCTTGCAGGGAGTTTCTCCATTTTAGTAATTCCACAATTTCTTTCACTTCCCTTCAATTTTCCAACGCAAAAGTTCCTTCAAGCTCAGAGCAAGGTTAAGGTTATTGCATGGATTGGGTTGGTGGCTTTAATTCTGCACATTGGGATGCTCTGGTTCTTAATTTATGTGTTAGATTTTGGCTTAGCTGGTGCAGCTTTGGCATTTGATATCACGAGTTGGGGGATCACAGTGGCTCAACTTGTTTATGTTGTGATCTGGTGTAAGGATGGATGGAATGGATTGTCATGGCTGGCTTTTAAGGATATTTGGGCCTTTGTTAGGCTCTCTCTTGCATCAGCTGTAATGCTTTGCCTTGAAGTTTGGTATATGATGAGCGTTATAGTTCTTGCTGGCCACCTTGATAATGCAGTGATTGCTGTTGATTCCCTCTCTATATGCATGAATATCAATGGGTGGGAAGCCATGCTCTTCATTGGAGTAAATGCAGCTGTCAGTGTCAGAGTTTCCAATGAACTTGGGCTTGGACATCCAAGAGCTGCCAAGTACTCTGTCTATGTGATAGTCTTTCAGTCACTTTTCTTGGGAATCTTTTTCATGGCTATTATTTTGGCGACTAGAGATTATTATGCCATTATTTTTACAAACAGTGAGGTTTTGCATAAGGCCGTTGCGAAACTAGGATACCTCCTTTCTGTGACAATGGTTCTAAACAGTGTTCAACCAGTGGTTTCAGGTGTTGCTATTGGAGGTGGGTGGCAAGCCCTGGTGGCCTACATCAACTTAGGTTGTTATTACTTATTTGGGCTTCCACTGGGGTTCCTTCTTGGTTATACAGCAAATTTGGGGGTTGAGGGACTTTGGGGTGGTATGATATGTGGAATTGTTCTCCAGACCTTGCTGCTCTTGTTGATACTTTACAAAACCAATTGGAAGAAAGAGGTGGAACAAACAACTGAACGCATGCGGATATGGAGTGGACAAGACATTGGAGTTGATAAGATAGTGGCTTCTGCATAA 1485 0.4505 MDAPLLLVNGEGAALVAENGDYVAVRELKEVKKVFWIETKRVWEIAMPIVFNIWCQFGVNSVTSMFVGHLGDIQLSAISLINSVIGTFAFGFMLGMGSATETLCGQAFGAGQVNMLGVYMQRSWVILSVTSILLLPIYIFAAPILKLLGQQEDIADLAGSFSILVIPQFLSLPFNFPTQKFLQAQSKVKVIAWIGLVALILHIGMLWFLIYVLDFGLAGAALAFDITSWGITVAQLVYVVIWCKDGWNGLSWLAFKDIWAFVRLSLASAVMLCLEVWYMMSVIVLAGHLDNAVIAVDSLSICMNINGWEAMLFIGVNAAVSVRVSNELGLGHPRAAKYSVYVIVFQSLFLGIFFMAIILATRDYYAIIFTNSEVLHKAVAKLGYLLSVTMVLNSVQPVVSGVAIGGGWQALVAYINLGCYYLFGLPLGFLLGYTANLGVEGLWGGMICGIVLQTLLLLLILYKTNWKKEVEQTTERMRIWSGQDIGVDKIVASA* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1301 494 PANTHER PROTEIN DETOXIFICATION 20 476 - -
Gso20g1301 494 CDD MATE_eukaryotic 38 472 IPR045069 GO:0042910|GO:1990961
Gso20g1301 494 TIGRFAM matE: MATE efflux family protein 48 443 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Gso20g1301 494 Pfam MatE 268 430 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Gso20g1301 494 Pfam MatE 48 205 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Gso20g1301 494 PANTHER MULTIDRUG RESISTANCE PROTEIN 20 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1301 Gso-Chr20 43029796 43033859 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1301 K03327 - gmx:100799559 945.266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1301 20 43029796 43033859 Gso10g2075 10 47726008 47730449 GST
Gso16g1482 16 35007902 35011736 Gso20g1301 20 43029796 43033859 PCT
Gso9g1100 9 31685549 31692549 Gso20g1301 20 43029796 43033859 PCT
Gso20g1301 20 43029796 43033859 Gso16g1482 16 35007902 35011736 PCT
Gso20g1301 20 43029796 43033859 Gso9g1100 9 31685549 31692549 PCT