Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1230 ATGGCAATAGACTGCATAACAAGTATACCCATGATGCCTCAAGCACCACCCCAAGAAACAACCAAAGAACAACAAGAACAGCAGCCACTGGTGTTTGATGCCTCAGTCCTCAGACACCAACTTCACATACCCTCACAATTCATCTGGCCCGATGAGGAGAAAGCATGCTTGGACGAACCCGAGTTGTTGGTCCCATTCATTGACTTGGGAGGGTTCCTCTCTGGTGACCCAGTTGCCGCAGCGGAAGCCTCAAGGCTTGTTGGTGAGGCATGCCAAAAGCATGGCTTTTTTCTGGTTGTGAATCACGGGATTGATCAACGGTTGATATCTGATGCTCATCTTTACATGGAGCACTTCTTTGGCCTTCCCCTGTCTCAGAAACAGAGGGCACAGAGGAAGCCAGGGGAGCACTGTGGTTATGCTAGTAGCTTCACTGGCAGGTTCTCCTCAAAGCTCCCTTGGAAAGAGACACTTTCCTTTCAGTACTCAGCTGACAAAAACTCATCACCAACTCTTGTCAAAGACTACTTGTGCAGTAAAATGGGCAATGAGTTTGAGCAATTTGGGAAAGTTTACCAGGATTACTGTGATGCCATGAGCCGTCTTTCTTTAGGTATAATGGAGCTTCTAGGAATGAGCCTTGGAGTTGGTAGAGCCTGCTTTAGGGAGTTTTTTGAAGAGAATAGTTCAATAATGAGGCTCAATTACTACCCTCCTTGTCAAAAACCTGACCTCACTTTGGGCACTGGACCTCATTGTGATCCAACATCTTTGACCATTCTTCACCAGGACCAAGTGGGTGGCTTGCAAGTTTGTGTTGACAATGAGTGGCATTCCATTAAGCCGGATTTCAATGCTTTTGTTGTCAATGTTGGTGATACCTTCATGGCACTTTCAAATGGGAGATACAAGAGTTGCTTGCATAGGGCAGTGGTGAATAGCCAGACAACAAGAAAATCTCTTGCTTTCTTTTTGTGTCCAAGAAGTGACAAGGTGGTAAGTCCACCATGTGAATTAGTGGACAATTTGGGCCCAAGGCTATACCCTGATTTTACATGGCCGATGCTGCTTGAGTTCACTCAAAAGCATTACCGAGCTGACATGAAAACCCTTGAGGCATTTGCCAACTGGCTGCAACGGAAAAGTAACTGA 1152 0.4609 MAIDCITSIPMMPQAPPQETTKEQQEQQPLVFDASVLRHQLHIPSQFIWPDEEKACLDEPELLVPFIDLGGFLSGDPVAAAEASRLVGEACQKHGFFLVVNHGIDQRLISDAHLYMEHFFGLPLSQKQRAQRKPGEHCGYASSFTGRFSSKLPWKETLSFQYSADKNSSPTLVKDYLCSKMGNEFEQFGKVYQDYCDAMSRLSLGIMELLGMSLGVGRACFREFFEENSSIMRLNYYPPCQKPDLTLGTGPHCDPTSLTILHQDQVGGLQVCVDNEWHSIKPDFNAFVVNVGDTFMALSNGRYKSCLHRAVVNSQTTRKSLAFFLCPRSDKVVSPPCELVDNLGPRLYPDFTWPMLLEFTQKHYRADMKTLEAFANWLQRKSN* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1230 383 PANTHER GIBBERELLIN 20-OXIDASE 22 379 - -
Gso20g1230 383 SUPERFAMILY Clavaminate synthase-like 37 367 - -
Gso20g1230 383 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 228 327 IPR005123 -
Gso20g1230 383 MobiDBLite consensus disorder prediction 13 27 - -
Gso20g1230 383 Gene3D - 34 365 IPR027443 -
Gso20g1230 383 PRINTS Isopenicillin N synthase signature 87 104 - -
Gso20g1230 383 PRINTS Isopenicillin N synthase signature 252 273 - -
Gso20g1230 383 PRINTS Isopenicillin N synthase signature 287 313 - -
Gso20g1230 383 MobiDBLite consensus disorder prediction 1 27 - -
Gso20g1230 383 Pfam non-haem dioxygenase in morphine synthesis N-terminal 64 167 IPR026992 -
Gso20g1230 383 Pfam 2OG-Fe(II) oxygenase superfamily 230 327 IPR044861 -
Gso20g1230 383 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 22 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1230 Gso-Chr20 42288106 42290116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1230 41 377 Glycosyltransferase AT5G59530 28.448 4.92e-31 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1230 K05282 - gmx:100816992 783.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1230 20 42288106 42290116 Gso10g2151 10 48546472 48548674 GST
Gso16g1607 16 36688918 36690721 Gso20g1230 20 42288106 42290116 PCT
Gso9g1229 9 35340704 35342793 Gso20g1230 20 42288106 42290116 PCT
Gso20g1230 20 42288106 42290116 Gso16g1607 16 36688918 36690721 PCT
Gso20g1230 20 42288106 42290116 Gso9g1229 9 35340704 35342793 PCT