Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1535 ATGCCAGAATCGTACTGCGTGAAGGAGAGTAAACCCTGTGTGGGTTGGGTTGAGAAATACTTGGATGATTGTCTCTGCAATTTGAAAGATAAAATCTCCTTTGGCTTTGGCTTCATAAGTCTCGTATGTTGGGGAGTAGCAGAAATTCCTCAGATAATAACCAACTTTCGCGCTAAGTCCAGCCATGGTGTCTCCTTAGCCTTTCTCCTCACTTGGGTCGCTGGCGACATATTCAACCTCCTTGGTTGCCATCTGGAGCCAGCCACGCTTTACACAATCACTACGATCGTGTTAGTACTTCAAAGTTTCTATTATGACTACATCTATAAATGGGGCAAGCCTCTTCGGAAGATTAACATCGATGAGGCTCATGAAGAAGAAGAGAAAAAACCTTTGAGACAGAAACCAGGCCGCGACTCTGGGATTCCAATACAAAATGACGGACCCAAAGAAACGCCTCGACGGGATTACTACTATAGGTCAGCGAGATCTTTGGCTGCTAATGATACTCCACCATTTGGTACCTACTTGAGAGCTGCTAAAAGTGTCCCTTCAGCCATGGAAATGAACAATGATTCATCCTCAGATGATGAGGCACCTCCACTCTCTTCTACGAAGCCTGTAACACAGCCTAGACCAATCCCCCGTTCTGTCCCTACAAGCTATGGAACTTTTCTAGCAGCATCTATGAACTTGCCCCGGCAGGGTAATGCTTTGATGGAGGGATACAAAAGATTCAATGGAAGAAAGCTACTCTCGCAGGAGCACAACATGCACAGTGCTTTGGGTCAATGGTTAGGATGGCTCATGGCTGTTATCTATATGGGTGGCCGGCTTCCTCAAATATGGTTGAATATTAAAAGAGGGAGCGTGGAGGGCTTAAATCCACTCATGTTCATCTTTGCATTGATCGCCAATGCCACTTACGTGGGAAGTATTCTTGTACGAACTATCGAATGGGAAAGCATCAGAGCTAATATGCCATGGCTTTTGGATGCCATTGTTTGCGTGGCATTGGACCTATTCGACTATAAAGTTGGTAAACCTCAACAGTGGCAGATAATTTTGCAGTATGCCAACTACAGATACGTTCGGAAGAAAACAGGAAGTGATGATGCTGATTATGGAGACTACAAAGAAGCCAGCAAAACTTTTGTGTCTTGA 1164 0.4485 MPESYCVKESKPCVGWVEKYLDDCLCNLKDKISFGFGFISLVCWGVAEIPQIITNFRAKSSHGVSLAFLLTWVAGDIFNLLGCHLEPATLYTITTIVLVLQSFYYDYIYKWGKPLRKINIDEAHEEEEKKPLRQKPGRDSGIPIQNDGPKETPRRDYYYRSARSLAANDTPPFGTYLRAAKSVPSAMEMNNDSSSDDEAPPLSSTKPVTQPRPIPRSVPTSYGTFLAASMNLPRQGNALMEGYKRFNGRKLLSQEHNMHSALGQWLGWLMAVIYMGGRLPQIWLNIKRGSVEGLNPLMFIFALIANATYVGSILVRTIEWESIRANMPWLLDAIVCVALDLFDYKVGKPQQWQIILQYANYRYVRKKTGSDDADYGDYKEASKTFVS* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1535 387 Pfam PQ loop repeat 262 317 IPR006603 -
Gso1g1535 387 Pfam PQ loop repeat 32 85 IPR006603 -
Gso1g1535 387 MobiDBLite consensus disorder prediction 126 154 - -
Gso1g1535 387 MobiDBLite consensus disorder prediction 185 217 - -
Gso1g1535 387 MobiDBLite consensus disorder prediction 186 205 - -
Gso1g1535 387 PANTHER PQ-LOOP REPEAT FAMILY PROTEIN / TRANSMEMBRANE FAMILY PROTEIN 3 384 - -
Gso1g1535 387 SMART ctns 276 307 IPR006603 -
Gso1g1535 387 SMART ctns 46 77 IPR006603 -
Gso1g1535 387 Gene3D - 263 368 - -
Gso1g1535 387 Gene3D - 35 118 - -
Gso1g1535 387 PANTHER SEVEN TRANSMEMBRANE PROTEIN 1-RELATED 3 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1535 Gso-Chr1 52015413 52020129 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1535 K23678 - gmx:100815310 752.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1535 1 52015413 52020129 Gso11g0540 11 4838793 4843152 GST
Gso1g1535 1 52015413 52020129 Gso2g0498 2 5267915 5274348 PCT
Gso1g1535 1 52015413 52020129 Gso16g1140 16 30348543 30353776 PCT
Gso2g0498 2 5267915 5274348 Gso1g1535 1 52015413 52020129 PCT
Gso16g1140 16 30348543 30353776 Gso1g1535 1 52015413 52020129 PCT