Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0540 ATGCCAATGCTACCATCGTACTGCGTGAAGGAGAGTAAACCCTGTGTGGGTTGGGTTGAGAAATACTTGGGTGATTGTCTCTGCAATTTGAAAGATGAAATCTCCTTTGGCTTTGGCTTCATAAGTCTCATATGTTGGGGAGTAGCAGAAATTCCTCAGATAATAACCAACTTTCGCGCTAAGTCCAGCCATGGTGTCTCCTTAGCCTTTCTCCTCACTTGGGTCGCGGGCGACATATTCAACCTCGTTGGTTGCCATCTGGAGCCAGCCACGTTGCCAACCCAGTACTACACAGCTCTGCTTTACACAATCACTACGATCGTGTTAGTACTTCAAAGTTTCTATTATGATTACATCTATAAATGGGGCAAGCGTCATGGGAAGATCAACACCGATGAGGCTTATAAAGAAGAAGAGAAAAAACCTTTGAGACCGAAAGCAGGCCGCGACCACTCTGGGATTCCAATACAAAATGACGGACCCAAAGAAACGCCTCGACGGGATTACTACTATAGGTCAGCGAGATCTTTGGCTGCTAATGATACTCCACCATTTGGTACATACTTGAGAGCTGCTAAAAGTGTCCCTTCAGCCATTGTAATGAACGACGATTCATCTTCTGATGATGATGAGGCTCATCCACTTTCTTCTAAGAAGCCTGTAACACAGCCTAGACCCATCCCCCGTTCTGTCCCTGCCACTTATGGAACTTTTCTAGTAGCATCTATGAACTTTCCCCGGCAGGGTAATGCCTTGATGGAGGGATACAATAGATTCAATGGAAGAAAACTACTCTTGCAAGAGCACAACAGCATGCACACTGCTTTGGGTCAATGGTTAGGATGGCTCATGGCTGTTATCTACATGGGTGGCCGGCTTCCTCAAATATGGTTGAATATTAAAAGAGGGGGCGTGGAGGGCTTAAATCCTCTTATGTTCGTCTTTGCATTAATCGCCAATGCCACTTACGTGGGAAGTATTCTTGTACGAACTACCGAATGGGAAAGCATCAGAGCTAATATGCCATGGCTGTTGGATGCCATAGTTTGCGTGGCATTGGACCTATTCATAATTTTGCAGTATGCCAACTACAGATACCTTGGGAAGAAAACAGGAAGTGATGATGCTGATTATGGAGACTACTGA 1146 0.4529 MPMLPSYCVKESKPCVGWVEKYLGDCLCNLKDEISFGFGFISLICWGVAEIPQIITNFRAKSSHGVSLAFLLTWVAGDIFNLVGCHLEPATLPTQYYTALLYTITTIVLVLQSFYYDYIYKWGKRHGKINTDEAYKEEEKKPLRPKAGRDHSGIPIQNDGPKETPRRDYYYRSARSLAANDTPPFGTYLRAAKSVPSAIVMNDDSSSDDDEAHPLSSKKPVTQPRPIPRSVPATYGTFLVASMNFPRQGNALMEGYNRFNGRKLLLQEHNSMHTALGQWLGWLMAVIYMGGRLPQIWLNIKRGGVEGLNPLMFVFALIANATYVGSILVRTTEWESIRANMPWLLDAIVCVALDLFIILQYANYRYLGKKTGSDDADYGDY* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0540 381 Gene3D - 276 377 - -
Gso11g0540 381 Gene3D - 37 126 - -
Gso11g0540 381 MobiDBLite consensus disorder prediction 200 229 - -
Gso11g0540 381 PANTHER PQ-LOOP REPEAT FAMILY PROTEIN / TRANSMEMBRANE FAMILY PROTEIN 5 376 - -
Gso11g0540 381 Pfam PQ loop repeat 34 87 IPR006603 -
Gso11g0540 381 Pfam PQ loop repeat 276 334 IPR006603 -
Gso11g0540 381 SMART ctns 290 321 IPR006603 -
Gso11g0540 381 SMART ctns 48 79 IPR006603 -
Gso11g0540 381 MobiDBLite consensus disorder prediction 135 166 - -
Gso11g0540 381 PANTHER SEVEN TRANSMEMBRANE PROTEIN 1-RELATED 5 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0540 Gso-Chr11 4838793 4843152 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0540 K23678 - gmx:100780977 773.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0540 11 4838793 4843152 Gso11g0540 11 4838793 4843152 ECH
Gso1g1535 1 52015413 52020129 Gso11g0540 11 4838793 4843152 GST
Gso11g0540 11 4838793 4843152 Gso2g0498 2 5267915 5274348 PCT
Gso11g0540 11 4838793 4843152 Gso16g1140 16 30348543 30353776 PCT
Gso2g0498 2 5267915 5274348 Gso11g0540 11 4838793 4843152 PCT
Gso16g1140 16 30348543 30353776 Gso11g0540 11 4838793 4843152 PCT