Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1140 ATGCCACCTTCTTACTGCGTGAAGGAGAGAAAACCATGTGTGAGATGGGTCGAGAAATATTTCAAAGATTGCCTTTGCAATTTGAAAGATGAAATCTCGTTCAGCTTCGGCCTCACAAGTCTAGTGTTCTGGGGTGTGGCTGAAATTCCTCAAATAATCACCATTTTTCGTACCAAGAAAAGCCATGGAGTTTCCCTTGTCTTTCTCCTCACTTGGGTTGCTGGGGATATATGCAATTTGACGGGTTGCATTCTTGAACCAGCTACTTTGCCAACACAGTACTACACAGCTCTGCTTTACACAATCACTACGATCGTATTACTACTGCTAATCGTATACTATGACTACATCAGCAGATGGTACAAACATCGTCAGAAGGTCAACCTCAAAAGGGATCATGAAGAGGAGAAAAAGCCATTGAAGCCACCGAAACCAACTAGCAAATCTGGAATTCCAATACCAAATGGCACACCCAAGGCAGCACCTAGACAGGAGCACTATTATATGTCAGCAAGATCATTGGCTGGGAGTGGCACTCCACCCTGGGGAACCTACATGGGAGCTGCTAAAAGTGGCCCTGCAGCCATGGAATCGATCAATGACTCTTCTTCCGACAATGAAGCACCTCCTGCTTCCTCAAATAATTCTGCAACCCAAGCTATGCCAATCCCACGTTCTGTTGCTGGAAGTTATGGAACATTTCTAGCAGCTGCTGTTAATTTGCCTCTCAGGGGCAATGCTTTGAGGGAAGGATACATAGGATTTGGTGGAAGAAAACTTTTGCAGGAGTACGAGACACATAGTACATTTGGTCAATGGCTGGGATGGCTCATGGCTGCTATCTATATAAGTGGTCGTGTTCCTCAAATATGGTTGAACATTAAAAGAGGCAGTGTGGAGGGGTTAAATCCTTTCATGTTCGTCTTCGCATTGGTTGCTAATGTCACTTACGTGGGAAGTATTCTTGTAAGAACTACAGAATGGGAAAGAATCAAAGCTAATATGCCATGGTTATTGGATGCCGTAATTTGCGTGGCATTGGACTTCTTCATAATATCTCAGTATATCTACTATAGATGCTTTCAAAGGAGAGAAGCACGTGATGATCACAAAGAAGCTGGAAAAGCTGCTGCATCTTGA 1140 0.4377 MPPSYCVKERKPCVRWVEKYFKDCLCNLKDEISFSFGLTSLVFWGVAEIPQIITIFRTKKSHGVSLVFLLTWVAGDICNLTGCILEPATLPTQYYTALLYTITTIVLLLLIVYYDYISRWYKHRQKVNLKRDHEEEKKPLKPPKPTSKSGIPIPNGTPKAAPRQEHYYMSARSLAGSGTPPWGTYMGAAKSGPAAMESINDSSSDNEAPPASSNNSATQAMPIPRSVAGSYGTFLAAAVNLPLRGNALREGYIGFGGRKLLQEYETHSTFGQWLGWLMAAIYISGRVPQIWLNIKRGSVEGLNPFMFVFALVANVTYVGSILVRTTEWERIKANMPWLLDAVICVALDFFIISQYIYYRCFQRREARDDHKEAGKAAAS* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1140 379 Gene3D - 35 126 - -
Gso16g1140 379 Gene3D - 270 370 - -
Gso16g1140 379 MobiDBLite consensus disorder prediction 196 221 - -
Gso16g1140 379 MobiDBLite consensus disorder prediction 131 160 - -
Gso16g1140 379 PANTHER PQ-LOOP PROTEIN/TRANSMEMBRANE FAMILY PROTEIN 1 379 - -
Gso16g1140 379 SMART ctns 46 77 IPR006603 -
Gso16g1140 379 SMART ctns 284 315 IPR006603 -
Gso16g1140 379 MobiDBLite consensus disorder prediction 194 221 - -
Gso16g1140 379 Pfam PQ loop repeat 32 88 IPR006603 -
Gso16g1140 379 Pfam PQ loop repeat 271 327 IPR006603 -
Gso16g1140 379 PANTHER SEVEN TRANSMEMBRANE PROTEIN 1-RELATED 1 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1140 Gso-Chr16 30348543 30353776 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1140 K23678 - gmx:100787660 736.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0498 2 5267915 5274348 Gso16g1140 16 30348543 30353776 GST
Gso1g1535 1 52015413 52020129 Gso16g1140 16 30348543 30353776 PCT
Gso11g0540 11 4838793 4843152 Gso16g1140 16 30348543 30353776 PCT
Gso16g1140 16 30348543 30353776 Gso1g1535 1 52015413 52020129 PCT
Gso16g1140 16 30348543 30353776 Gso11g0540 11 4838793 4843152 PCT