Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0901 ATGAAACGTTTGGTGTTTTCTTTGGCCTGGGCTTTTGCTCTTTTGCTAGCTTGTTCATTGGTTTCTGGTGCTGTTGTAGAACACACTTTCAATATAGGTAACTTGACTGTGTCCCGCTTGTGCAATGAGGAAGTGATTACAACAGTCAATGGAAGCCTGCCTGGACCAACGATTTACGTTGAAGAGGGTGACACTCTTGTGGTCCATGCAAACAACAATTCACCCTACAATATTACCCTTCATTGGCATGGAATTTTTCAAATTTTGACTGCATGGGCAGATGGTCCTGAATCTGTAACTCAATGTCCAATACGTCCTGGTGGAAAGTATACCTATAGATTTAACATAACAGGACAAGAGGGTACCCTATGGTGGCATTCCCACTCTTCTTTTCTACGTGCAACCGTCTATGGAGCTCTTATCATTCGCCCTAGAAGAGGAAACTCACACCCATTCCCTTCAGTTTACCAAGAAGTCCCCATATTGCTTGGGGAATGGTGGAATGGTAATGTTGTTGATGTGGAGAACAACGCAATTGAAACCGGTATTGGTCCAAATTTGTCAGATGCTTACACAATTAATGGCTTGCCTGGAGATACTTACAATTGCTCCCAAAATCAGACATACCAACTCCAAGTGAAACATGGAGAAACCTACCTGTTGCGCATTATCAACGCTGCACTCAATGCACAACACTTTTTTAAGATAGCCAACCACACATTCACAGTGGTAGCCATCGATGCTTCCTACACTCAACCCTACAACACCGATGTTATAATCCTTGCCCCAGGCCAAACCGTGGATGCAATCATAACCACAAACCAAACTTTGGGTTCTTATTACATGGCCTTCACTCCATATCATTCCGCCCCAGGCGTTTCAATCAACAATAACATAACCCGAGGCGTGGTCATTTATGAGAATGCCACATCAGCATCACCTGTCATGCCGGACCTCCCAGCCCAAACTGACACACCCACTGCCCACAAGTTCTACACCAACATCACTGGGTTGGCTGGTGGACCTCACTGGGTCCCAGTATCACTTAATGTGGATCAACATATGTTGATAACTTTTGGAATTGGGTTAGACCATTGTCCCGAACTAGATCCAGAGGGGTGTGGTGGAAGAAATTTTCGACTCTCCGCAAGTATGAATAACGAGTCATTTGTTTTGCCTAAAGGGCTCTCGATGATGGAAGCTTTTTTTCGAAATGTTAGCGGGGTGTACACTAGAGATTTTCCAGATAATCCTCCATTTGTGTTTAACTACACCGATCCAACGTTAGAGACCAATGGTACAGACATAGCGTTTGCACCTAAATCAACCAAGGTGAAGCCTTTGACGTTCAATTCAACAGTGCAAGTTGTTCTTCAGAATACGGCTATACTTGCAAGGGAGAACCATCCAATTCACCTTCACAGCTTCAATTTCCATGTTTTAGCACAAGGGTTTGGAAATTATGATTCCAACGTGGATGAATCAAAGTTTAATCTTGATAACCCTCAAATACGTAACACGATTTCGGTGCCGGTAGGAGGATGGGCCGTTATTAGATTCCAAGCAAATAATCCAGGTATATGGCTAGTGCACTGCCACTTGGAGACTCATTTGCCATGGGGGTTAGCCATGGCTTTCGAGGTTGAAAATGGACCTGAACCATGGGTGCTGCCTCCGCCACCAGCTGATTTGCCCCAATGCTAA 1704 0.4448 MKRLVFSLAWAFALLLACSLVSGAVVEHTFNIGNLTVSRLCNEEVITTVNGSLPGPTIYVEEGDTLVVHANNNSPYNITLHWHGIFQILTAWADGPESVTQCPIRPGGKYTYRFNITGQEGTLWWHSHSSFLRATVYGALIIRPRRGNSHPFPSVYQEVPILLGEWWNGNVVDVENNAIETGIGPNLSDAYTINGLPGDTYNCSQNQTYQLQVKHGETYLLRIINAALNAQHFFKIANHTFTVVAIDASYTQPYNTDVIILAPGQTVDAIITTNQTLGSYYMAFTPYHSAPGVSINNNITRGVVIYENATSASPVMPDLPAQTDTPTAHKFYTNITGLAGGPHWVPVSLNVDQHMLITFGIGLDHCPELDPEGCGGRNFRLSASMNNESFVLPKGLSMMEAFFRNVSGVYTRDFPDNPPFVFNYTDPTLETNGTDIAFAPKSTKVKPLTFNSTVQVVLQNTAILARENHPIHLHSFNFHVLAQGFGNYDSNVDESKFNLDNPQIRNTISVPVGGWAVIRFQANNPGIWLVHCHLETHLPWGLAMAFEVENGPEPWVLPPPPADLPQC* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0901 567 CDD CuRO_1_LCC_plant 28 144 IPR034288 GO:0005507
Gso1g0901 567 Gene3D - 19 144 IPR008972 -
Gso1g0901 567 PANTHER LACCASE-7 8 567 - -
Gso1g0901 567 SUPERFAMILY Cupredoxins 21 168 IPR008972 -
Gso1g0901 567 ProSitePatterns TonB-dependent receptor proteins signature 1. 1 71 IPR010916 -
Gso1g0901 567 ProSitePatterns Multicopper oxidases signature 2. 531 542 IPR002355 GO:0005507
Gso1g0901 567 SUPERFAMILY Cupredoxins 152 341 IPR008972 -
Gso1g0901 567 Pfam Multicopper oxidase 34 145 IPR011707 GO:0005507
Gso1g0901 567 Gene3D - 156 340 IPR008972 -
Gso1g0901 567 SUPERFAMILY Cupredoxins 380 567 IPR008972 -
Gso1g0901 567 Pfam Multicopper oxidase 158 308 IPR001117 -
Gso1g0901 567 PANTHER MULTI-COPPER OXIDASE 8 567 IPR045087 -
Gso1g0901 567 Gene3D - 375 567 IPR008972 -
Gso1g0901 567 Pfam Multicopper oxidase 414 550 IPR011706 GO:0005507|GO:0016491
Gso1g0901 567 TIGRFAM laccase: laccase 25 567 IPR017761 GO:0046274|GO:0048046|GO:0052716
Gso1g0901 567 ProSitePatterns Multicopper oxidases signature 1. 526 546 IPR033138 -
Gso1g0901 567 CDD CuRO_2_LCC_plant 159 306 IPR034285 -
Gso1g0901 567 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0901 Gso-Chr1 36830154 36839252 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0901 K05909 - gmx:100814779 1137.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0901 1 36830154 36839252 Gso3g0644 3 19041996 19046373 GST
Gso18g1553 18 46314823 46320890 Gso1g0901 1 36830154 36839252 PCT
Gso7g1205 7 16973514 16978760 Gso1g0901 1 36830154 36839252 PCT