Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1553 ATGAAGCTTTCCGTGTTCTGGTTTGCATGGGCTTTTGCTCTTCTAGTTTCCATGGCTTCTGCTGCTACAGTAGAACACACTTTCATTGTTCAAAACAAGGCTGTCACACGCTTGTGCAAAGAGCGAGTGATTGTCACAGTTAATGGACTTTATCCTGGACCAAGGATAGATGTCAGAGAAGGGGACGCTGTGATTGTTCACGTAATCAACAAGTCACCCTACAATATCACTATTCATTGGCATGGAGTATTCCAGCTCTTTAGTGCATGGGCAGATGGTCCTGAATATATAACCCAATGCAATATTCGTCCCCAAAAGAGTTACACTTATAAATTCAATGTGATACAACAAGAAGGGACATTGTGGTGGCATGCACACTCAGGAGTTTTACGTGCCACGGTTCATGGTGCTTTTATCATTCACCCTCGTTCGGGTCTGTTTCCTTTTCCTAAACCCTACAAGCAAGTACCAATAATATTAGGTGATTGGTATGACGGTAATGTTGTGGATATTTATCAGCAAGTACTGCTTCTCGGGGATGTAAGACCATCTGCTGCCTACACCATCAATGGTTTGCCTGGTGATCTCTACAATTGCTCTAGAAATCAGATGTTCAAGCTAAAGGTAAGGCCAGGGAAGACCTACTTGCTAAGAATGATCAACGCTGCATTCAATAATAACCTTTTCGTCAAGATAGCCAACCACAGCTTCACAGTCGTTGCCATGGACGCTTCCTACATCGAACCCTATGCAACCGACATCATCACCATTGCCCCTGGCCAAAGTGCTGACGTGCTCTTCAAAGCCAACCAACCCATAGGCTCATATTACATGGCAGCCTCTCCTTACGTTGTGGGCCAGCCAGAAGTGCTATTCGACACCACGACAACTCGCGGCATTGTCGTTTACGAAGGCTACAAGACATCATCAAAAAATTATTCAAAGCCCATTGTGCCAATACTCCCACACTTCAACGACACCCCAATTGCTCACAAATTTTTTAGCAACATCACGAGCTTGATGGGGGCCCCACATTGGGTCCCGGTCCCACTTGAGGTGGATGAGCACATGTTCATCACCATTAACATAAACCTTGAAAGGTGTCCCAAGAATGGCACGTGTCAAGGTGTGTTTGGACAGAAATTCTCCGCAAGCATGAACAACGAATCATTTGTGCACCCCGTTGGAAAAGGATACTCTATGTTGGAAGCATCGTTTTACAATGTGAGTGGTGTGTATACTACTGATTTCCCTGACAAGCCTCCAATCATATTCGATTTCACGGACCCCAAAATTGCTTTGGATACCAAGTATTTGTTTACGCCGCCAAAATCGACCAAGGTGAAGAAACTCAAGTTCAATTCCACCGTGGAGGTTGTGTTTCAAAATACCCAAATTATGAACGCGCAAAGCCACCCCATGCACCTTCATGGTTTTAGTTTCCATGTTTTGGCTCAAGATTTTGGGAATTTCGATTACACCAAAGATAAACACAAGTTTAATTTGGTGAACCCAATATTTCGCAACACGATTGCTGTGCCAGCGGGAGGATGGGCTGTTATCAGATTCCAAGCAAACAATCCAGGGATGTGGTTTGTGCATTGCCATGTGGATGATCATCAGCTATGGGGACTAGACATGGTTTTCGAGGTTGAAAATGGACCAACTCCTTCAACTTCTCTACCTCCACCACCTGCTGATCTACCTAAATGTTAG 1716 0.4458 MKLSVFWFAWAFALLVSMASAATVEHTFIVQNKAVTRLCKERVIVTVNGLYPGPRIDVREGDAVIVHVINKSPYNITIHWHGVFQLFSAWADGPEYITQCNIRPQKSYTYKFNVIQQEGTLWWHAHSGVLRATVHGAFIIHPRSGLFPFPKPYKQVPIILGDWYDGNVVDIYQQVLLLGDVRPSAAYTINGLPGDLYNCSRNQMFKLKVRPGKTYLLRMINAAFNNNLFVKIANHSFTVVAMDASYIEPYATDIITIAPGQSADVLFKANQPIGSYYMAASPYVVGQPEVLFDTTTTRGIVVYEGYKTSSKNYSKPIVPILPHFNDTPIAHKFFSNITSLMGAPHWVPVPLEVDEHMFITININLERCPKNGTCQGVFGQKFSASMNNESFVHPVGKGYSMLEASFYNVSGVYTTDFPDKPPIIFDFTDPKIALDTKYLFTPPKSTKVKKLKFNSTVEVVFQNTQIMNAQSHPMHLHGFSFHVLAQDFGNFDYTKDKHKFNLVNPIFRNTIAVPAGGWAVIRFQANNPGMWFVHCHVDDHQLWGLDMVFEVENGPTPSTSLPPPPADLPKC* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1553 571 Gene3D - 15 142 IPR008972 -
Gso18g1553 571 ProSitePatterns Multicopper oxidases signature 2. 534 545 IPR002355 GO:0005507
Gso18g1553 571 Gene3D - 154 343 IPR008972 -
Gso18g1553 571 PANTHER MULTI-COPPER OXIDASE 1 571 IPR045087 -
Gso18g1553 571 SUPERFAMILY Cupredoxins 149 344 IPR008972 -
Gso18g1553 571 ProSitePatterns Multicopper oxidases signature 1. 529 549 IPR033138 -
Gso18g1553 571 SUPERFAMILY Cupredoxins 15 165 IPR008972 -
Gso18g1553 571 CDD CuRO_1_LCC_plant 26 142 IPR034288 GO:0005507
Gso18g1553 571 Gene3D - 367 571 IPR008972 -
Gso18g1553 571 Pfam Multicopper oxidase 155 305 IPR001117 -
Gso18g1553 571 TIGRFAM laccase: laccase 22 571 IPR017761 GO:0046274|GO:0048046|GO:0052716
Gso18g1553 571 CDD CuRO_2_LCC_plant 156 303 IPR034285 -
Gso18g1553 571 PANTHER LACCASE 1 571 - -
Gso18g1553 571 Pfam Multicopper oxidase 30 144 IPR011707 GO:0005507
Gso18g1553 571 Pfam Multicopper oxidase 417 553 IPR011706 GO:0005507|GO:0016491
Gso18g1553 571 SUPERFAMILY Cupredoxins 348 571 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1553 Gso-Chr18 46314823 46320890 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1553 K05909 - gmx:100799343 1156.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1553 18 46314823 46320890 Gso7g1205 7 16973514 16978760 GST
Gso18g1553 18 46314823 46320890 Gso1g0901 1 36830154 36839252 PCT
Gso18g1553 18 46314823 46320890 Gso3g0644 3 19041996 19046373 PCT