Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0343 ATGAAGAGGGGTAGTAGTAAAGTAGACCCCTTTGTGCTACCCAACAGGCTCACACTGCTTCAGATTTTCATGGTGGTGATGCTCCTTTACCTTCTCTTCATAAGCTTCGAAATCCCTCTCGCTTTCAGAGCCGGGCTAGGTACCGAAAACGGCGCCGTTTTCCTCACCGACGCATTGCCCATGCCCATGCCGCTCTTGCTCGAAGAATCACACAACAGGGTCGAAATTAGAGCACCCAGAGGGCTGAAGTTGGAGAAAGTTTCCACCTTGAGGTTCAACGAGAGCTTCTCGGAGGGTTCGGAGCTGCACAAGGTGGCGCGGCACGCGTGGGTCGCGGGGGAGAAGCTCTGGGGGGAAGTGGAGAGCTTCGTGAAAATTAAGGTCGAAAACGGGTCGGACTCGTGCCCGAATTCGGTGTCGGTGTCCGGGGCGGGGTTCCGCGACAAGGGGGTGATGGTGCTGCCGTGCGGGCTGACGCTCTGGTCGCACGTGACGGTGGTGGGGACGCCACGGTGGGCGCACGCCGAGAGGGACCCGAAGATTGCGGTGGTGAGGGACGGGGGCGAGGCGGTGATGGTGTCGCAGTTCATGATGGAGTTGCAAGGCTTGAAGGCCGTGGACAAGGAGGAGCCGCCGAGGATTCTGCATTTCAATCCGAGGCTGAGAGGTGATTGGAGTGGGAAGCCAGTGATTGAGCAGAACACTTGTTATAGGATGCAGTGGGGTTCTGCTCTCAGGTGTGAGGGGTGGAAGTCTCGTGCGGATGAAGAAACTGTTGATGGACATGTGAAATGTGAAAAGTGGATTCGTGATGACAATAATCGTTCTGAAGAGTGGAAGGCGACATGGTGGTTAAACAGATTGATAGGGCGAAAAAAGAAGGTGACGGTAGACTGGCCATATCCTTTTGCTGAGGGCAAGTTATTTGTTCTCACCATAAGTGCTGGCTTGGAAGGTTACCATGTTAGTGTGGATGGGAGGCATGTGACATCCTTTCCCTATCGCACGGGATTTGCTCTTGAGGATGCTACTGGACTATCTATTAATGGGGATGTTGATGTGCACTCTATATTTGCTGCTTCCTTACCTACATCACATCCTAGCTTTGCTCCACAGATGCATCTTGAATTGCTTCCTCAGTGGAAAGCTCTTCCTCTTCGCAATATGAATGTGGAGCTTTTCATTGGTATCCTTTCTGCTGGAAACCATTTTGCTGAACGGATGGCAGTGAGGAAGTCCTGGATGCAGCATAAGCTAATCCAATCTTCACATGTTGTGGCTCGATTTTTTGTAGCCTTGCATGCAAGGAAGGATATAAATGTGGACATAAAGAAAGAAGCAGAGTATTTTGGTGATATGATTATAGTCCCATACATGGATCATTATGACCTTGTTGTGTTGAAGACCATAGCTATCTGTGAATATGGGATTCATACTGTGGCTTCTAAGTATATCATGAAATGTGATGATGACACATTTGTCAGAGTGGATTCTATCATAAACGAAGCAAGACAAATTCAAAGTAGAAGTCTCTACATGGGAAATATGAATTATCACCACAGGCCTCTTCGCCATGGGAAATGGGCTGTAACTTATGAGGAATGGGTAGAGGAAGAATATCCCATCTATGCTAATGGTCCAGGTTACATAGTCTCAGCTGACATAGCTCAGTTCATTGTATCTGAATTTGAGAAGCGCAAATTAAAATTATTCAAAATGGAGGATGTGAGCATGGGAATGTGGGTGGAGCAGTTCAACAGCACAAGACCAGTGGAGTATGTGCACAACTTGAAGTTCTGCCAATTTGGGTGCTTTGAAGAGTACTACACTGCACACTACCAATCACCAAGACAAATGACATGCATGTGGGAAAAATTGCAACATCAAGGAAAACCACTCTGTTGCAACATGAGATGA 1917 0.4836 MKRGSSKVDPFVLPNRLTLLQIFMVVMLLYLLFISFEIPLAFRAGLGTENGAVFLTDALPMPMPLLLEESHNRVEIRAPRGLKLEKVSTLRFNESFSEGSELHKVARHAWVAGEKLWGEVESFVKIKVENGSDSCPNSVSVSGAGFRDKGVMVLPCGLTLWSHVTVVGTPRWAHAERDPKIAVVRDGGEAVMVSQFMMELQGLKAVDKEEPPRILHFNPRLRGDWSGKPVIEQNTCYRMQWGSALRCEGWKSRADEETVDGHVKCEKWIRDDNNRSEEWKATWWLNRLIGRKKKVTVDWPYPFAEGKLFVLTISAGLEGYHVSVDGRHVTSFPYRTGFALEDATGLSINGDVDVHSIFAASLPTSHPSFAPQMHLELLPQWKALPLRNMNVELFIGILSAGNHFAERMAVRKSWMQHKLIQSSHVVARFFVALHARKDINVDIKKEAEYFGDMIIVPYMDHYDLVVLKTIAICEYGIHTVASKYIMKCDDDTFVRVDSIINEARQIQSRSLYMGNMNYHHRPLRHGKWAVTYEEWVEEEYPIYANGPGYIVSADIAQFIVSEFEKRKLKLFKMEDVSMGMWVEQFNSTRPVEYVHNLKFCQFGCFEEYYTAHYQSPRQMTCMWEKLQHQGKPLCCNMR* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0343 638 Pfam Galactoside-binding lectin 151 358 IPR001079 GO:0030246
Gso1g0343 638 SMART Gal_bind_lectin_2 154 359 IPR001079 GO:0030246
Gso1g0343 638 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 11 638 IPR002659 GO:0006486|GO:0016020|GO:0016758
Gso1g0343 638 SUPERFAMILY Concanavalin A-like lectins/glucanases 152 358 IPR013320 -
Gso1g0343 638 PANTHER BETA-1,3-GALACTOSYLTRANSFERASE-LIKE PROTEIN 11 638 - -
Gso1g0343 638 Pfam Galactosyltransferase 406 585 IPR002659 GO:0006486|GO:0016020|GO:0016758
Gso1g0343 638 Gene3D - 190 358 - -
Gso1g0343 638 CDD GLECT 154 358 IPR001079 GO:0030246
Gso1g0343 638 Gene3D - 386 630 - -
Gso1g0343 638 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 150 360 IPR001079 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0343 Gso-Chr1 4318970 4324594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0343 7 638 Glycosyltransferase AT1G74800 59.970 0.0 816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0343 K20843 - gmx:100803219 1311.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0343 1 4318970 4324594 Gso2g0210 2 2184393 2189563 GST
Gso1g0343 1 4318970 4324594 Gso18g1041 18 17329974 17334091 PCT
Gso18g1041 18 17329974 17334091 Gso1g0343 1 4318970 4324594 PCT