Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1928 ATGAGTGAAGCAACAACAAGAAACGAACGGCGGGTTCTGGTGGCGGTGGACGAAGGCGAGGAAAGCATGTACGCTCTTTCTTGGAGCCTCAAGAACATAATTTTCCAAAATTCCAGCGATACCCTTATCCTTCTTTACGTCAAGCCCCCTCATGCCGTTTATTCCCCCTTAGATTCCACAGCCAGGATAGATCATCCTGAAACTCCAGGATATTTGTTTTCGTCGGACGTAAGTGCGGCCATCGAGAAGTATGGCCAAGAAGTGGCAGATTGCGTGTTAGAGAAAGCAAAAAAATTGTGTAAAGATCTCCAAAACGTCAAGGTGGAAACCCGGGTAGAAATTGGAGACCCAAGGGACGTGATCTGTGACATGTCTCAAAAGTTGGGTGCTGACTTGTTAATCATGGGTAGCCACGGCTATGGAGTTGTAAAGAGGGCTTTCCTTGGAAGTGTGAGCAATTACTGCTCACAGAACGTGAAGTGCCCAATTTTGATAGTCAAGAAGCCAAAACCATCTGCTGGTGCTGGAAAATGA 534 0.4663 MSEATTRNERRVLVAVDEGEESMYALSWSLKNIIFQNSSDTLILLYVKPPHAVYSPLDSTARIDHPETPGYLFSSDVSAAIEKYGQEVADCVLEKAKKLCKDLQNVKVETRVEIGDPRDVICDMSQKLGADLLIMGSHGYGVVKRAFLGSVSNYCSQNVKCPILIVKKPKPSAGAGK* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1928 177 Pfam Universal stress protein family 10 167 IPR006016 -
Gso19g1928 177 Coils Coil 93 113 - -
Gso19g1928 177 Gene3D HUPs 4 175 IPR014729 -
Gso19g1928 177 PRINTS Universal stress protein signature 9 27 IPR006015 -
Gso19g1928 177 PRINTS Universal stress protein signature 127 139 IPR006015 -
Gso19g1928 177 PRINTS Universal stress protein signature 145 167 IPR006015 -
Gso19g1928 177 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 10 169 - -
Gso19g1928 177 CDD USP_Like 11 166 - -
Gso19g1928 177 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 1 173 - -
Gso19g1928 177 PANTHER OS05G0357525 PROTEIN 1 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1928 Gso-Chr19 47995463 47996932 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1928 - - gmx:100804158 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1928 19 47995463 47996932 Gso19g1928 19 47995463 47996932 ECH
Gso19g1928 19 47995463 47996932 Gso3g1968 3 45209140 45211052 GST
Gso19g1928 19 47995463 47996932 Gso10g1352 10 39921813 39923054 PCT
Gso10g1352 10 39921813 39923054 Gso19g1928 19 47995463 47996932 PCT