Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1875 ATGGTCTCCACCTCAAAGATTTCAACCATTCATGGGTCACCTCTCACATTTAAACTTAGTGATTATAATCTCTTTGCGATGGATACTTCTCGCAGAATTGCTGGATTCAAATATGATTGCTTGCTTTTCGATATGGACGATACTCTCTACCCATTGAGCACAGGTCTCAATTTGGCATGTCGCAAGAACATAGAAGAGTATATGTTGAAACACCTGCATATGGAAGAAAGTGAAGTACCAAAGATTTGCGTGGATTTGTACAGGGAATATGGGACAACTATGGCAGGACTAAAGGCCTTTGGTCATGAGTTTGACAATGATGAATTTCATGCCTACGTGCATGGAAGATTACCATACAAGAAACTGAAGCCAGATCCAGTGTTAAGGAACCTTCTGTTTTCCATGCCTCAGCGTAAAATAGTATTCACTAATGCAGATCAAGCACATGCACATCAAGTTCTCAACAGATTAGGCTTGAAAGAATGTTTTGACAGCATCATATGCTTTGAAACACTTAATCCTCCTAATTACACAAATGTACCTACTGATAATCTCGCGCTAACATGGAGTAACTCGTTTAACAAAGATTGTAACCAAGTAGAGAACCGATGTTTCAACTCCAAGACACAAATCCTATGCAAACCCTCTGTGGAAGCCATTGAAGTTGCCATTCAGATTGCTAATTTAGATCCAAGGAAAACGTTGTTTTTTGATGATAGTGCTAGAAACATTGCAAGTGGGAAAGCTGCTGGACTTAACACAGTTATTGTGGGACGATCAGATTTGGTTCCTGGTGCTGACTATGCACTGAGTAGCATTCATAATATCAAAGAAGCATTACCCGAAATATGGGAGGTTGAGGGAGAGCTACAGCAAATGATCCAATCCCCAGCAGTTGAAACCATGGTCCTTGCATAG 918 0.4041 MVSTSKISTIHGSPLTFKLSDYNLFAMDTSRRIAGFKYDCLLFDMDDTLYPLSTGLNLACRKNIEEYMLKHLHMEESEVPKICVDLYREYGTTMAGLKAFGHEFDNDEFHAYVHGRLPYKKLKPDPVLRNLLFSMPQRKIVFTNADQAHAHQVLNRLGLKECFDSIICFETLNPPNYTNVPTDNLALTWSNSFNKDCNQVENRCFNSKTQILCKPSVEAIEVAIQIANLDPRKTLFFDDSARNIASGKAAGLNTVIVGRSDLVPGADYALSSIHNIKEALPEIWEVEGELQQMIQSPAVETMVLA* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1875 305 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 211 257 IPR006439 -
Gso19g1875 305 TIGRFAM Pyr-5-nucltdase: pyrimidine 5'-nucleotidase 39 257 IPR010237 -
Gso19g1875 305 SUPERFAMILY HAD-like 40 261 IPR036412 -
Gso19g1875 305 PANTHER OS07G0634400 PROTEIN 34 305 - -
Gso19g1875 305 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE 34 305 - -
Gso19g1875 305 SFLD C1.5.3: 5'-Nucleotidase Like 37 286 IPR010237 -
Gso19g1875 305 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 37 286 - -
Gso19g1875 305 Gene3D - 96 284 IPR023214 -
Gso19g1875 305 CDD HAD_5NT 40 259 IPR010237 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1875 Gso-Chr19 47471854 47475079 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1875 K18551 - gmx:100786323 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1875 19 47471854 47475079 Gso3g1911 3 44664414 44668854 GST
Gso19g1875 19 47471854 47475079 Gso10g1285 10 38880299 38882751 PCT
Gso10g1285 10 38880299 38882751 Gso19g1875 19 47471854 47475079 PCT