Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1733 ATGCAGAGAATGGCGTACACGTTTTCGTTTCCGGAGGAGGTGCTGGAGCACGTGTTCTCGTTCATATGGAACGAGAGGGACAGGAACGCGATCTCGCTGGTGTGTAAGTCATGGTACGAGATCGAGAGGTGGTGCAGGAGGAAGGTGTTCGTGGGGAACTGCTACGCGGTGAGCCCTCTGATGGTGGTCAAGCGGTTCCCGGAGGTGAGATCCATTGCGCTCAAAGGGAAGCCGCACTTTGCGGACTTCAATTTGGTCCCCGATGGCTGGGGAGGTTACGTCTGCCCCTGGATCGCCGCCATGGCTCGCGCCTTCCCCTGCCTCGAAGAAATCAGGCTCAAGAGGATGGTCATCACCGACGAGAGCTTGGAACTCATCGCTAAGTCCTTCAAGAACTTCAAGGTCTTGGTTCTCACTTCCTGTGAGGGTTTTACCACTGATGGACTTGCCGCCATTGCTGCCAACTGCAGGAATTTGAGGGAATTGGACTTGCAAGAGAGTGAAGTGGAGGAGGACCTTAGTGGGCACTGGCTAAGCCATTTTCCTGATTCCTATACGTCATTAGTTTCACTTAACATCTCTTGCTTAAACAATGAGGTGAGTTTATCTGCGCTAGAGCGTCTGCTTGGGAGGTGTCCCAACCTGCGGACCCTCCGTCTCAATCGTGCCGTGCCCCTTGATAGACTACCCAACCTACTTCTCCAGTGTCCTCAGCTGGTTGAGTTAGGCACAGGAGTCTACTCAACTGAGATGCGACCAGAGGTCTTCTCAAACCTGGAAGCAGCATTTTCTGGCTGCAAGCAGTTGAAGAGCTTGTCTGGCTTTTGGGATGTGCTCCCATCCTACCTTCCAGCTGTCTACCCCATCTGCTCAAGGCTAACATCGCTAAACTTGAGTTATGCTATTATTCAAAGCTCTGATCTTATTAAGCTTATCAGTCAATGCCCAAATTTGTTGCGATTATGGGTGCTGGATTACATAGAAGATGCTGGTCTTTATGCCCTTGCTGCATCATGTAAGGATCTAAGAGAGTTAAGGGTGTTTCCTTCTGACCCATTTGGTTTAGAACCAAATGTTGCATTGACAGAACAGGGCCTTGTCTCTGTGTCTGAAGGTTGCCCCAAGCTCCAATCAGTTCTATATTTTTGTCGTCAAATGTCGAATGCAGCCCTACATACAATTGCGCGGAACAGGACTAATTTGACTCGTTTTCGGCTTTGTATTATTGAGCCTCGGACTCCTGACTATCTAACCCATGAACCCCTGGATTCTGGTTTTGGGGCTATTGTAGAGCAATGCAAGGATCTTCAACGCCTATCCCTATCTGGTCTTCTTACTGACCGTGTTTTCGAGTATATCGGGACTTGTGGTAAGAAGCTGGAGATGCTATCTGTGGCTTTTGCTGGAGATAGTGATTTGGGACTTCATCATGTGCTATCAGGGTGTGATAATCTTAGGAAGCTGGAGATCAGGGACTGCCCCTTTGGTGACAAGGCCCTTTTGGCAAATGCTGAAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCCTGCTCGGTGAGTTATGGAGCATGTAAGCTACTGGGTCAGAAAATGCCAAGACTCAACGTTGAAGTCATTGATGAAAGAGGACCTCCAGATTCAAGGCCAGATGATTGTCCAGTTGAGAAGCTTTATATATACAGGACTATTGCCGGGCCAAGGTTGGACATGCCTGGTTTTGTGTGGACAATGGAAGATGATTCTTCACTAAGGCTTGAGTGA 1764 0.4904 MQRMAYTFSFPEEVLEHVFSFIWNERDRNAISLVCKSWYEIERWCRRKVFVGNCYAVSPLMVVKRFPEVRSIALKGKPHFADFNLVPDGWGGYVCPWIAAMARAFPCLEEIRLKRMVITDESLELIAKSFKNFKVLVLTSCEGFTTDGLAAIAANCRNLRELDLQESEVEEDLSGHWLSHFPDSYTSLVSLNISCLNNEVSLSALERLLGRCPNLRTLRLNRAVPLDRLPNLLLQCPQLVELGTGVYSTEMRPEVFSNLEAAFSGCKQLKSLSGFWDVLPSYLPAVYPICSRLTSLNLSYAIIQSSDLIKLISQCPNLLRLWVLDYIEDAGLYALAASCKDLRELRVFPSDPFGLEPNVALTEQGLVSVSEGCPKLQSVLYFCRQMSNAALHTIARNRTNLTRFRLCIIEPRTPDYLTHEPLDSGFGAIVEQCKDLQRLSLSGLLTDRVFEYIGTCGKKLEMLSVAFAGDSDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAEKLETMRSLWMSSCSVSYGACKLLGQKMPRLNVEVIDERGPPDSRPDDCPVEKLYIYRTIAGPRLDMPGFVWTMEDDSSLRLE* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1733 587 SUPERFAMILY RNI-like 28 536 - -
Gso19g1733 587 Pfam F-box 8 48 IPR041567 -
Gso19g1733 587 Pfam Transport inhibitor response 1 protein domain 67 113 IPR041101 -
Gso19g1733 587 Gene3D - 3 46 - -
Gso19g1733 587 PANTHER PROTEIN TRANSPORT INHIBITOR RESPONSE 1 8 579 - -
Gso19g1733 587 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 8 579 - -
Gso19g1733 587 SMART LRR_CC_2 433 456 IPR006553 -
Gso19g1733 587 SMART LRR_CC_2 130 155 IPR006553 -
Gso19g1733 587 SMART LRR_CC_2 315 338 IPR006553 -
Gso19g1733 587 SMART LRR_CC_2 290 314 IPR006553 -
Gso19g1733 587 SMART LRR_CC_2 482 506 IPR006553 -
Gso19g1733 587 SMART LRR_CC_2 105 129 IPR006553 -
Gso19g1733 587 SMART LRR_CC_2 373 397 IPR006553 -
Gso19g1733 587 Gene3D Ribonuclease Inhibitor 47 578 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1733 Gso-Chr19 46228366 46232206 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1733 K14485 - gmx:100779021 1194.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1733 19 46228366 46232206 Gso3g1765 3 43469335 43473193 GST
Gso19g1733 19 46228366 46232206 Gso2g1268 2 15708811 15711776 PCT
Gso19g1733 19 46228366 46232206 Gso10g0187 10 1954185 1957101 PCT
Gso2g1268 2 15708811 15711776 Gso19g1733 19 46228366 46232206 PCT
Gso10g0187 10 1954185 1957101 Gso19g1733 19 46228366 46232206 PCT