Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0187 ATGCGGCCGAGAGTAAATTACTCCTTCCCCGAGGAGGTGCTGGAGCACGTGTTCTCCTTCATCGAGTGCGACAAGGACCGAGGCTCGATCTCCCTCGTCTGCAAGTCCTGGTACGAGATCGAGCGCTGGTGTCGCCGGAGAGTCTTCGTCGGAAACTGCTACGCCGTCTCTCCGGCCACCGTCGTCAACCGCTTCCCCAAGGTTAGATCCATCGCCATCAAGGGGAAGCCGCACTTCGCCGACTTCAATTTGGTCCCCGAGGGTTGGGGCGCTTATGTGGGCCCTTGGATCAAGGCCATGGCCGCTGCCTACCCCTGGCTTCAGGAGATCAGGCTCAAGAGGATGGTTATCTCCGACGAATGCTTGGAACTCATCGCCAAATCGTTTAAGAACTTCCAAGTCTTGGTTCTCACCTCTTGCGAGGGTTTCACCACTGACGGACTTGCTGCCATTGCCGCCAATTGCAGGAATTTGAGGGAGTTGGAGTTGCGGGAGAGTGAGGTGGACGACATTTGTGGGCATTGGCTGAGCCATTTTCCTGATTCATACACATCGTTGGTTTCCCTTAACATTTCTTGCTTAGGCAATGAGGTGAATTTGTCTGCCCTAGAGCGCCTTGTTAGTAGGTGTCCCAACCTGCAGACTCTCCGCCTCAACCGTGCTGTGCCGCTAGACAGGCTTGCCAACCTTCTTCGCGGAGCTCCTCAATTGGTTGAGTTAGGCACGGGAACCTACACGACTGAGATGCGACCGGAGGTCTTCACAAACCTGGCGGAGGCATTTTCTGGGTGCAAGCAATTGAAGGGCTTGTCTGGATTTTGGGACGTTCTCCCATCCTACCTTCCAGCTGTCTATCCCATCTGCTCCAACCTGACATCACTGAACTTGAGTTATGCAACTATTCAAAGCCCCGATCTTATCAAGCTTGTTGGTCAATGTGAGAGTTTGCAGCGTTTATGGGTGCTGGATTACATAGAAGATGCTGGTCTTGAAGTGATTGCTGCATCGTGTAAGGATCTGAGGGAGTTGAGGGTGTTTCCCTCTGACCCGTTTGGGTTAGAACCAAATGTAGCATTGACAGAACAGGGCCTTGTATCCGTGTCTGAAGGCTGCACCAAGCTCCAGTCAGTTCTATATTTTTGTCGCCAAATGACTAATTCTGCCTTGGATACAATTGCCAGGAACAGGCCTAATATGACACGTTTTAGACTATGTATTATCGAGCCTCAAGCTCCTGACCATCTTACCCATCAACCTCTGGATGCTGGTTTTGGAGCTATTGTAGAGCATTGCAAGGATCTTCAGCGCCTTTCCCTTTCCGGGCTTCTTACTGACCGTGTTTTTGAATATATTGGGACTTATGGCAAGAAGCTTGAGATGCTTTCTGTGGCTTTCGCGGGAGATAGCGATCTGGGACTCCATCATGTGCTGTCTGGGTGTGACAACCTTAGGAAGCTGGAGATCAGGGACTGCCCCTTTGGTGACAAAGCCCTCTTGGCCAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCTTGCTTGGTGAGTTATGGAGCATGCAAACTGCTGGGTCAGAAACTGCCAAGACTTAATGTCGAAGTCATTGATGAAAGAGGACCTCCAGATTCAAGGCCGGAGAGTAGTCCTGTTGAGAAGTTATACATGTACAGGACTGTTTCTGGGCCAAGATTGGACATGCCAGGCTATGTATGGAGAATGCAAGATGATTCTGCATTAAGGATTTCTTGA 1758 0.5085 MRPRVNYSFPEEVLEHVFSFIECDKDRGSISLVCKSWYEIERWCRRRVFVGNCYAVSPATVVNRFPKVRSIAIKGKPHFADFNLVPEGWGAYVGPWIKAMAAAYPWLQEIRLKRMVISDECLELIAKSFKNFQVLVLTSCEGFTTDGLAAIAANCRNLRELELRESEVDDICGHWLSHFPDSYTSLVSLNISCLGNEVNLSALERLVSRCPNLQTLRLNRAVPLDRLANLLRGAPQLVELGTGTYTTEMRPEVFTNLAEAFSGCKQLKGLSGFWDVLPSYLPAVYPICSNLTSLNLSYATIQSPDLIKLVGQCESLQRLWVLDYIEDAGLEVIAASCKDLRELRVFPSDPFGLEPNVALTEQGLVSVSEGCTKLQSVLYFCRQMTNSALDTIARNRPNMTRFRLCIIEPQAPDHLTHQPLDAGFGAIVEHCKDLQRLSLSGLLTDRVFEYIGTYGKKLEMLSVAFAGDSDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCLVSYGACKLLGQKLPRLNVEVIDERGPPDSRPESSPVEKLYMYRTVSGPRLDMPGYVWRMQDDSALRIS* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0187 585 Pfam F-box 7 47 IPR041567 -
Gso10g0187 585 Gene3D Ribonuclease Inhibitor 46 576 IPR032675 -
Gso10g0187 585 SUPERFAMILY F-box domain 8 43 IPR036047 GO:0005515
Gso10g0187 585 Gene3D - 1 45 - -
Gso10g0187 585 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 7 576 - -
Gso10g0187 585 SMART LRR_CC_2 371 395 IPR006553 -
Gso10g0187 585 SMART LRR_CC_2 129 154 IPR006553 -
Gso10g0187 585 SMART LRR_CC_2 480 504 IPR006553 -
Gso10g0187 585 SMART LRR_CC_2 431 454 IPR006553 -
Gso10g0187 585 PANTHER PROTEIN TRANSPORT INHIBITOR RESPONSE 1 7 576 - -
Gso10g0187 585 Pfam Transport inhibitor response 1 protein domain 66 112 IPR041101 -
Gso10g0187 585 SUPERFAMILY RNI-like 33 534 - -
Gso10g0187 585 SMART fbox_2 9 50 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0187 Gso-Chr10 1954185 1957101 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0187 K14485 - gmx:100779337 1174.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1268 2 15708811 15711776 Gso10g0187 10 1954185 1957101 GST
Gso19g1733 19 46228366 46232206 Gso10g0187 10 1954185 1957101 PCT
Gso3g1765 3 43469335 43473193 Gso10g0187 10 1954185 1957101 PCT
Gso10g0187 10 1954185 1957101 Gso19g1733 19 46228366 46232206 PCT
Gso10g0187 10 1954185 1957101 Gso3g1765 3 43469335 43473193 PCT