Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1707 ATGATGCCGAAACCGATGAACGTTTTGACAACAAAGCCCTCACCTTTGAGCACCATGGTGGTGCTGCTGATCCTCTGCATTCTGGGTTTCTACGCTCTGCATTTGCCTCACTCTTCCACACCTTCCTTCACTTCCAAAAGCCTTTCTCACTTGGAAAAACATTTTCTTTCCACTTCCTCAAACTCTACCATTTCTTCCTACCTCCGCGCTCTTACCCTGCACCCTCACCTCGCCGGAACAAAACCCGCTTCAGACACAACCCGCCACGTTCTCAACCACTTCACTTCATTGGGCCTACAGACCCATACAACAACGTACACCACTCTCCTTTCCTTCCCCGTGCGCTCTTCCCTCTCGGCGCACTTTAGCGATGGCGCTTCGGTAAGCCTGCGGCTCACCGAAGCGTCGGGGCCGGGGGTGGTGGCGGCGTACCACGCGTACTCGCCGTCGGGCAAGGTGCACGCGCGGGCGGTGTTCGCGAACTACGGGAGGGAGAGGGACTACCGCGCGCTGGCGGCGATGGGAGTGAACGTGAGCGGCTGCGTGGTGGTGGTGCGTAAGGGCGGAAGGATGGGGCGGGGCGCGGTAGTGGAGAGGGCGGAGGCGAACGGCGCGGCGGCGGTGCTGGTTTACGGCGAGGGTGACACGTGGCGGAAGGGGTTTGAGAGGGGACATGTGATGAGAGGGGGGATAGGGGACCCACTTACTCCAGGGTGGGCTGGGGTTGAGGGTGGTGAGACACTGGGGTTGGAAGATGGTGAGGTTTTGAAGAGGTTTCCTAAAATTCCATCTATGCCCTTGTCAGCTGAGGTGGCTGATACTATTTTGTCCTCTCTTGGGGGAGTTCCTCTGCCCCTTCAATGGAGGGGTACCCTTAAGTCTATGGTCAGGAATGTTGGTCCTGGCCCCACCATTCTCAATTTCACTTACCAGGGTGAAAAGAAGGTGGCCACCATTCAAAATGTTTTTGCCGTCATAATGGGATCCGAAGAACCTGATCGATATGTTCTGCTTGGGAACCATAGAGATGCATGGACGTATGGTGCTGTTGATCCCAGCAGTGGGACAGCTGCACTACTCGATATTGCTCGTCGATTTTCTGCTCTATTGGGCTTGGGTTGGAAGCCGAGGAGGACAATCATTCTCTGCAGTTGGGATGCAGAGGAATTTGGGATGATAGGATCCACTGAGTGGGTTGAACAAAACCTTATTAATCTTGGTTCCAAAGCTGTAGCATACCTTAATGTGGACTGTGCTGTGCAAGGTCCTGGTTTCTTTGTTGGTTCAACTCCTCAGCTAGACAGTCTTATTCTTGAGGTCACAAAAAAGGTCAAGGATCCTGACTCTGAGGGGGTATCATTATATGAAAATTGGGCTGCTGCTGCTGGTGGAGTCAATAATATTCAGAGGCTCAGTGGAGTAGATTCCGATTTTGCTCCATTTGTGCTACACGCAGGGGTTCCATCCATTGACATGTATTATGGAAGAGATTTTCCCGTCTATCACACTGCATTCGACTCCTATAACTGGATGGCAGAGTATGGAGATCCATTCTTCCACCGCCATGTTGCTGTTACTGGAGTTTGGGGGCTTCTGGCCCTTCACTTGGCTGATGATCCCGTTCTTCCTTTCAATTACGTTCCATATGCAAATGAGTTACAGTTGTACAAAAACACGTTGAGCAACTTGATAGACCAGAAAATTTCTCTACACCCATTAACCCTTTCAATTGAAGAATTTGCTTCTGCTGCCAAAGAAGCCAATGATGAATTAAAGAAACTGAGATTGCAAGAAAGTGAAAGTTGCTTTGTAGATATGAAAAAGCGAGCATTGAATGATAGACTAATGCTTGCAGAAAAAGGCTTCTTGGATGCAGATGGACTTCAAGGAAGGCAGTGGTTCAAGCATCTCGTGTTTGGGCCTTCAAGCAACCATGAAAAGTTGAATTTCTTCCCAGGGATTTCTGATTCTATCACTAGATTGTCGGGTATAAGTGAAAGAGAAAGGCTATCATCAATCCAACACGAGATTTGGAGGGTTGCCAGAGCCATTCGTAGAGCTGCTTCTGCACTCAGTGGAGAATTCACCTAA 2091 0.5026 MMPKPMNVLTTKPSPLSTMVVLLILCILGFYALHLPHSSTPSFTSKSLSHLEKHFLSTSSNSTISSYLRALTLHPHLAGTKPASDTTRHVLNHFTSLGLQTHTTTYTTLLSFPVRSSLSAHFSDGASVSLRLTEASGPGVVAAYHAYSPSGKVHARAVFANYGRERDYRALAAMGVNVSGCVVVVRKGGRMGRGAVVERAEANGAAAVLVYGEGDTWRKGFERGHVMRGGIGDPLTPGWAGVEGGETLGLEDGEVLKRFPKIPSMPLSAEVADTILSSLGGVPLPLQWRGTLKSMVRNVGPGPTILNFTYQGEKKVATIQNVFAVIMGSEEPDRYVLLGNHRDAWTYGAVDPSSGTAALLDIARRFSALLGLGWKPRRTIILCSWDAEEFGMIGSTEWVEQNLINLGSKAVAYLNVDCAVQGPGFFVGSTPQLDSLILEVTKKVKDPDSEGVSLYENWAAAAGGVNNIQRLSGVDSDFAPFVLHAGVPSIDMYYGRDFPVYHTAFDSYNWMAEYGDPFFHRHVAVTGVWGLLALHLADDPVLPFNYVPYANELQLYKNTLSNLIDQKISLHPLTLSIEEFASAAKEANDELKKLRLQESESCFVDMKKRALNDRLMLAEKGFLDADGLQGRQWFKHLVFGPSSNHEKLNFFPGISDSITRLSGISERERLSSIQHEIWRVARAIRRAASALSGEFT* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1707 696 Gene3D - 548 696 IPR036757 -
Gso19g1707 696 PANTHER N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE 17 694 IPR039373 -
Gso19g1707 696 SUPERFAMILY Zn-dependent exopeptidases 59 542 - -
Gso19g1707 696 Gene3D - 116 312 - -
Gso19g1707 696 SUPERFAMILY Transferrin receptor-like dimerisation domain 543 694 IPR036757 -
Gso19g1707 696 Coils Coil 577 597 - -
Gso19g1707 696 Gene3D Zn peptidases 62 543 - -
Gso19g1707 696 Pfam Peptidase family M28 321 509 IPR007484 -
Gso19g1707 696 SUPERFAMILY PA domain 109 323 IPR046450 -
Gso19g1707 696 Pfam PA domain 155 215 IPR003137 -
Gso19g1707 696 Pfam Transferrin receptor-like dimerisation domain 568 691 IPR007365 -
Gso19g1707 696 CDD M28_PSMA_like 317 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1707 Gso-Chr19 45984177 45989734 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1707 K01301 - gmx:100798131 1306.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1707 19 45984177 45989734 Gso3g1738 3 43224558 43230764 GST
Gso19g1707 19 45984177 45989734 Gso10g0799 10 11532633 11539153 PCT
Gso10g0799 10 11532633 11539153 Gso19g1707 19 45984177 45989734 PCT