Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1557 ATGTCTCCTGCAATGGCACTAAATGAGCAAAAGGGCAAGGATGATATCCCAGAAAGTCAATATCAGAAAGGAGTGAAACACTTGTGTGAGAAAGGTCATCTTAATGCGGTGCCTAAGAAGTACATACTTCCTGTTTCCGAAAGACCCACCAAGAGTAGTGTGGAGGATTCAAATGTTGTGAAGCAAAATCTTCAATTACCCATCATTGATTTTTCCGAATTGCTTGGTCCAAATAGGCCCCAAGTCCTTCGATCCCTAGCCAATGCTTGTCAACAGTATGGATTTTTCCAGTTGGTAAATCATTGCATCTCGGAGGATGTTGTGAGGAGCATGATAGATGTGAGTGGGAGGTTCTTCGATCTCCCTTTGGAGGAGAGAGCTAAGTACATGACAACTGATATGCGAGCACCGGTTCGATGTGGGACCAGCTTCAGCCAAACCAAAGACACTGTGTTGTGTTGGAGGGATTTCTTGAAACTCCTGTGCCATCCCTTACCAGATTTACTCCTCCATTGGCCTGCTTCACCAGTGGACTTTCGGAAAGTGGTGGCCACCTACGCAGAAGAAACCAAACATTTGTTCCTGGTGGTAATGGAAGCCATCCTAGAGAGCTTAGGAATTGTGGAAGCCAACCAAGAAGAGGATGACAATATTCTCAAAGAGTTTGAAAATGGGAGCCAAATGATGGTGGCCAATTTCTACCCACCATGCCCTCAACCAGACCTTACCCTTGGGATGCCCCCTCACTCCGACTATGGCTTCCTCACACTTCTCCTACAAGACGAGGTAGAAGGCTTGCAAATCCAACACCAAGACAAATGGGTCACCGTTCAACCCATTCCCAATGCCTTCGTTGTCAATGTTGGTGATCACTTAGAGATATATAGCAACGGAAAATACAAGAGCGTATTGCATAGAGTTGTGGCGAATGAAATTAAGAGTAGGGTGTCGGTGGCTTCGCTGCACAGCCTTCCCTTCAACTGCACGGTGAGACCGTCGCCAAAACTCGTTGACGAAGCGAATCCGAAGCGTTACATGGACACTGATTTTGGGACCTTTCTTGCCTACGTATCCTCCACAGAGCCTAACAAAAAGGATTTCCTCGAGTCTAGAAAAGTGTTACACTGA 1128 0.4637 MSPAMALNEQKGKDDIPESQYQKGVKHLCEKGHLNAVPKKYILPVSERPTKSSVEDSNVVKQNLQLPIIDFSELLGPNRPQVLRSLANACQQYGFFQLVNHCISEDVVRSMIDVSGRFFDLPLEERAKYMTTDMRAPVRCGTSFSQTKDTVLCWRDFLKLLCHPLPDLLLHWPASPVDFRKVVATYAEETKHLFLVVMEAILESLGIVEANQEEDDNILKEFENGSQMMVANFYPPCPQPDLTLGMPPHSDYGFLTLLLQDEVEGLQIQHQDKWVTVQPIPNAFVVNVGDHLEIYSNGKYKSVLHRVVANEIKSRVSVASLHSLPFNCTVRPSPKLVDEANPKRYMDTDFGTFLAYVSSTEPNKKDFLESRKVLH* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1557 375 Gene3D - 17 356 IPR027443 -
Gso19g1557 375 Pfam 2OG-Fe(II) oxygenase superfamily 227 322 IPR044861 -
Gso19g1557 375 PANTHER LEUCOANTHOCYANIDIN DIOXYGENASE-LIKE PROTEIN 14 373 - -
Gso19g1557 375 Pfam non-haem dioxygenase in morphine synthesis N-terminal 66 164 IPR026992 -
Gso19g1557 375 PRINTS Isopenicillin N synthase signature 86 103 - -
Gso19g1557 375 PRINTS Isopenicillin N synthase signature 249 270 - -
Gso19g1557 375 PRINTS Isopenicillin N synthase signature 284 310 - -
Gso19g1557 375 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 224 324 IPR005123 -
Gso19g1557 375 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 14 373 - -
Gso19g1557 375 SUPERFAMILY Clavaminate synthase-like 24 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1557 Gso-Chr19 44531117 44534701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1557 22 348 Glycosyltransferase AT5G59530 35.777 1.95e-53 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1557 - - gmx:100778488 757.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1557 19 44531117 44534701 Gso3g1577 3 41727939 41731267 GST
Gso19g1557 19 44531117 44534701 Gso10g0544 10 6088227 6091761 PCT
Gso10g0544 10 6088227 6091761 Gso19g1557 19 44531117 44534701 PCT