Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1489 ATGGGTTCACTAGAAAGATCAAAGAAGAAAGTTCTTCTATGGAAGAAGGCCATGCTCCATTTTTCCCTATGTTTTTTGATGGGGGTTTTCACAGGCTTAGCTCCAACAGGTAAATCTTCTCTCTTTTCCACCAAAGTTGCTGTCTCAAATAGGACAGAATTTGCACCACAACCTAGTGAAATGTCAAACCTCACAACAAATGTCAATAGAATTTGGATAGCTCCAATGCCAGATACCATGCCCGTGAAGCCTAGAATCCTTGAAAATGAAAAGAAAAAAACAACAAAGTTGCATGCAAAAAAACAGCCCCAGTTGAAGCCTAGAAGACTCATAATCATTGTAACACCAACAAGCACAAAACTACCCCACCAAGCAGTGTTTTTGAGAAGGTTGGCAAATACTATAAAGCTGGTTCCTCAACCATTGCTGTGGATTGTTGTGGAAGCTAAAACCAATTCCACAGAACTGCCAGAGATATTAAGGAAAACTGGCATCATGTATAGGCATGTGGTTTTCAAGGAAAATTTCACGGAATTAGAAGCTGAACTGAATCACCAGAGGAATCTTGCACTTAAGCACATTGAGCACCACAGGCTCAACGGCATTGTACACTTTGCTGGCCTTTCCAATGTTTATGATCTCCAATTCTTCCATCAGCTTAGAGATATTGAGGTCTTTGGAACATGGCCAACCGCATTGTTAGCTGCACACAGGAAGAAAGTGAAAATCGAAGGACCTGTATGTGATTCATCACAAGTCATTGGTTGGCATCTTAGGAATATGAACAATGAAACTGATACAATCACTCCCCCAATTCATATTTCAAGTTTTGCTTTTAATAGCTCCATCCTTTGGGACCCTGAGAGATGGGGTCGCACTTCCTCTGTTCAAGACACTTCTCAGAATTCAATCAAGTTCGTGAAGCAAGTAGTTCTAGAAGATGAGGCTAAATTAAAGGGAATTCCACCAGAAGATTGCTCCAAAATCTTGCTATGGCGTTTCAATTTTCGTGCCCGAACCATCACAAATCACTAA 1035 0.4077 MGSLERSKKKVLLWKKAMLHFSLCFLMGVFTGLAPTGKSSLFSTKVAVSNRTEFAPQPSEMSNLTTNVNRIWIAPMPDTMPVKPRILENEKKKTTKLHAKKQPQLKPRRLIIIVTPTSTKLPHQAVFLRRLANTIKLVPQPLLWIVVEAKTNSTELPEILRKTGIMYRHVVFKENFTELEAELNHQRNLALKHIEHHRLNGIVHFAGLSNVYDLQFFHQLRDIEVFGTWPTALLAAHRKKVKIEGPVCDSSQVIGWHLRNMNNETDTITPPIHISSFAFNSSILWDPERWGRTSSVQDTSQNSIKFVKQVVLEDEAKLKGIPPEDCSKILLWRFNFRARTITNH* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1489 344 Pfam Glycosyltransferase family 43 131 335 IPR005027 GO:0015018|GO:0016020
Gso19g1489 344 CDD GlcAT-I 109 338 IPR005027 GO:0015018|GO:0016020
Gso19g1489 344 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 1 341 IPR005027 GO:0015018|GO:0016020
Gso19g1489 344 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 110 344 IPR029044 -
Gso19g1489 344 PANTHER BETA-1,4-XYLOSYLTRANSFERASE IRX9-RELATED 1 341 - -
Gso19g1489 344 SUPERFAMILY Nucleotide-diphospho-sugar transferases 109 342 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1489 Gso-Chr19 43734910 43737660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1489 1 340 Glycosyltransferase AT2G37090 60.920 7.66e-153 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1489 K20869 - gmx:100785607 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1489 19 43734910 43737660 Gso3g1503 3 40935467 40939367 GST
Gso19g1489 19 43734910 43737660 Gso10g0436 10 4634384 4636926 PCT
Gso10g0436 10 4634384 4636926 Gso19g1489 19 43734910 43737660 PCT