Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1454 ATGAAAGGCATAGACATCTTCTGTGCATCACAGGCCTCAACAGCTATATGTCTTAGCATGGATCAACCCTCTTCCTCCTATTCCTCTTCTTCATCTTCCATTTCCAACACTGCTCAATTTGGTGGCAGAGCCATTGACCGCCACAACCCCATCATCACAGATCCTAGAAGAACCCCCTCAAGAGACCTCATTTCCCCTAGCTCTTCTTCTCAGTCCCCCATTGAGCCCAAACCTTTGCATGATCATCTCCAAAAGACAAAGAAAAACTCCACTTCCAAGCCAAGTGGTCAGAAGAAGAAGAGTGCTGCAAAGGGTCATGATCAGAAGAAGAAAAGTGCTGCGGGAAAGTTGACCGAACACATCACCAACAATTACTCCTCAAAACCAATTGACAGCATTCTGAGGAGGAGTTGGGCTAGGCCACCTTCTGATTTGATCACTCCTCCTGGTTCTTCAAGATATTTGCTCATTGACACGCCTTCCTTGGACCGCGTATCTTCGGTTTATGATCCTGTTTTGGCTTTAACTGATGTTAATAAGGAGAAAGCACAGGTTATTCATCTTGATCAAACCAAACATTCATCTAAACCCTCTAGCTCCACTCTTCCAAAATCTGATTCCTCAGACCAGGTTGTAGAATTGAGGGTTTCTCTGCACTGCAAAGGTTGTGAAGGGAAGGTGAGGAAACATCTGTCTAGAATGCGAGGAGTTACGTCCTTCAACATAGACTTTGCGGCAAAGAAGGTTACAGTAGTTGGTGATGTGACTCCTTTGAGCGTATTGGCAAGCATATCAAAGGTGAAGAATGCACAATTTTGGCCAGAACATGCTTCAATAGTTGGATCCGAAACAAAGAGAACAAATTTGATCTAA 873 0.4422 MKGIDIFCASQASTAICLSMDQPSSSYSSSSSSISNTAQFGGRAIDRHNPIITDPRRTPSRDLISPSSSSQSPIEPKPLHDHLQKTKKNSTSKPSGQKKKSAAKGHDQKKKSAAGKLTEHITNNYSSKPIDSILRRSWARPPSDLITPPGSSRYLLIDTPSLDRVSSVYDPVLALTDVNKEKAQVIHLDQTKHSSKPSSSTLPKSDSSDQVVELRVSLHCKGCEGKVRKHLSRMRGVTSFNIDFAAKKVTVVGDVTPLSVLASISKVKNAQFWPEHASIVGSETKRTNLI* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1454 290 SUPERFAMILY HMA, heavy metal-associated domain 210 267 IPR036163 GO:0046872
Gso19g1454 290 MobiDBLite consensus disorder prediction 60 75 - -
Gso19g1454 290 MobiDBLite consensus disorder prediction 188 207 - -
Gso19g1454 290 CDD HMA 213 266 IPR006121 GO:0046872
Gso19g1454 290 PANTHER OS08G0405700 PROTEIN 1 290 IPR044526 -
Gso19g1454 290 Pfam Heavy-metal-associated domain 214 266 IPR006121 GO:0046872
Gso19g1454 290 PANTHER COPPER CHAPERONE 1 290 - -
Gso19g1454 290 ProSiteProfiles Heavy-metal-associated domain profile. 217 267 IPR006121 GO:0046872
Gso19g1454 290 MobiDBLite consensus disorder prediction 21 42 - -
Gso19g1454 290 Gene3D - 207 271 - -
Gso19g1454 290 MobiDBLite consensus disorder prediction 21 123 - -
Gso19g1454 290 MobiDBLite consensus disorder prediction 190 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1454 Gso-Chr19 43411702 43414019 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1454 - - gmx:100786319 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1454 19 43411702 43414019 Gso3g1466 3 40641980 40644305 GST
Gso19g1454 19 43411702 43414019 Gso10g0397 10 4207980 4209632 PCT
Gso10g0397 10 4207980 4209632 Gso19g1454 19 43411702 43414019 PCT