Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1290 ATGGAATCAACTCACGTACTAGCCATTACAAATGAAGAAGAGAATATTGCTCGTTCAAAAGAGAATAAAACATTCCAATTTCATCTTCCCCCCATCATTTCCCATCTTGGGAAAAATGAGGTCCACTGTGTCTCCATTACTTCCAATCCTAGACACAAGCAGATGCAAAGTGGTGGCCATGATATGAGGAAGATAATCCACTGCATCAAAGTGGGAATCTCCTTGGTTTTGGTTTCACTCCTGTACCTCTTGAATCCTCTCTTTAAGCAAGTTGGAGAAAATGCAATGTGGGCTATCATGACTGTTGTAGTCATGTTTGAATTCTCTGCAGGAGCCACAATTGGAAAGGGCTTCAATCGTGGACTAGGAACTATTATAGGAGGTGGACTAGGTTGCTTAGCAGCAGTTTTTGCCCAAAGCATTGGGATTGGCAGGCTTGGCAACTCAATTATTATTGGTGCTTCAGTATTTATATTTGGATCAGTTGCTACATATCTTCGACTGGTTCCAAGCATAAAGAAAAGATACGATTATGGGGTGATGATATTCATGCTCACATTCAATCTAGTTGTGGTTTCTGGCGTACGTGGGGATGTGAAAGTGTGGGACTTAGCCAGGGAGCGTCTCTTGAATATACTAATGGGCTTCATTGTGTGCGTTTGTGTGACTTTGTTTGTCTTCCCTTTGTGGGCTAGCGATGAACTTCATGATTCCACGGTCTCAAGATTCCTGGACCTTGCCAACACAATTCAAGTTTGTTTTGGGGAATGTACCAAAATCGTTAGTGGAAAGGAAAACCAACCTCGTGCTAGCTTCAACGTTTGCAAGTCAGTGTTGAACTCCAAGTCAAAGGACGAATCATTGGCAAATTTTGCAAAATGGGAACCCTGGCATGGAAAATTCGGATTTTCCTACCCTTGGGGAAGGTACTTAAAGATTGGTGAAGTTCTTCGAGAACTGGCTGCATTTATTCTTGCAGCGGGACGTTGCCTTGAAGCATCAAAAGAGCCCATGGCCTCTTTGAGACGGTCAAAATGGGTCCATTTAGAAACATGCGAAGCAGTTGAGTCAAAGGTTGTGTTTATTCTACGAGAACTTGGAGAAAGCATGAAGCAAATGAGGAAATGTGATGCAAAGGGCAACATTTCGGGCCAGTTGAAAAATGCAAGAGAAGATTTAAGCTTGATAATTTCCACATCTAAAATGGTGGAACTTGAGGATTGCCAAGTGCTAGCAATTGCTAGCTTCGTGTTCTTGCTCATGGAAGTGATAGGGAAGGTAGAGGAATTGGTGAAAGAGGTGGAGGAGCTCGAAGACATTGCTGGTTTTCGCACCACCACAACTTCATTGTCTTCGTAG 1359 0.429 MESTHVLAITNEEENIARSKENKTFQFHLPPIISHLGKNEVHCVSITSNPRHKQMQSGGHDMRKIIHCIKVGISLVLVSLLYLLNPLFKQVGENAMWAIMTVVVMFEFSAGATIGKGFNRGLGTIIGGGLGCLAAVFAQSIGIGRLGNSIIIGASVFIFGSVATYLRLVPSIKKRYDYGVMIFMLTFNLVVVSGVRGDVKVWDLARERLLNILMGFIVCVCVTLFVFPLWASDELHDSTVSRFLDLANTIQVCFGECTKIVSGKENQPRASFNVCKSVLNSKSKDESLANFAKWEPWHGKFGFSYPWGRYLKIGEVLRELAAFILAAGRCLEASKEPMASLRRSKWVHLETCEAVESKVVFILRELGESMKQMRKCDAKGNISGQLKNAREDLSLIISTSKMVELEDCQVLAIASFVFLLMEVIGKVEELVKEVEELEDIAGFRTTTTSLSS* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1290 452 Coils Coil 420 440 - -
Gso19g1290 452 Pfam Aluminium activated malate transporter 58 437 IPR020966 GO:0015743
Gso19g1290 452 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 12-LIKE 4 445 - -
Gso19g1290 452 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 4 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1290 Gso-Chr19 41464097 41466826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1290 58 399 Miscellaneous Gene Families AT5G46600 41.761 2.89e-85 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1290 - - gmx:100779890 837.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1290 19 41464097 41466826 Gso3g1289 3 38621144 38624118 GST
Gso19g1290 19 41464097 41466826 Gso2g1226 2 15279945 15285131 PCT
Gso19g1290 19 41464097 41466826 Gso10g0224 10 2313515 2315903 PCT