Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1142 ATGGTGGGAAGCATTATGGGAGTGGTTCATAATGGATACTCAAATGGAAGTGTTGGTGTACAAAATTGTAATGGGGTGGAGGAGAAGCTTGATTGTTTGAGAAGGCTTATTGGGAAGGGTGATGGTGACCCTTTGAGAATTGTGAGTGTTGGAGCTGGTGCTTGGGGAAGTGTTTTTGCAGCTTTGCTACAAGACACTTATGGGCAATTTAGGGACAAGATACAGATCAGGATATGGAGAAGGGCAGGAAGGGCAGTGGATAGAGCCACTGCTGAACATCTCTTTGAGGTTATCAACTCAAGGGAAGATGTGTTGAGGAGGTTGATCCGGCGTTGCGCTTATCTCAAATATGTTGAGGCAAGGCTTGGTGATAGGACCCTCTTTGCTGATGAGATTCTCAAAGATGGTTTTTGCTTGAACATGATTGATACACCACTTTGTCCTTTGAAGGTTGTCACAAACTTGCAAGAAGCTGTTTGGGATGCTGATATTGTGGTCAATGGCTTGCCTTCAACAGAAACAAGAGAGATCTTTGAAGAGATTAGTAAGTATTGGAAGGAGAGAATCACAGTGCCTATAATTATCTCTTTGTCAAAGGGTATAGAGGCTGCATTGGAGCCTGTTCCACATATTATAACTCCCACAAAGATGATTAACCAAGCAACTAGAGTGCCTATGGAGAACATACTTTATCTTGGTGGTCCAAATATTGCCTCAGAAATCTACAACAAGGAGTATGCTAATGCAAGAATATGTGGAGCTGAGAAATGGAGGAAAGCTCTGGCAAAGTTTTTGCGCCAACCACACTTTATTGTCTGGGATAACAGTGATCTCGTCACTCATGAGGTCATGGGTGGCTTGAAAAATGTCTATGCAATTGGAGCTGGAATGGTAGCAGCCCTTACAAATGAGAGTGCCACAAGCAAATCCGTGTACTTTGCACACTGCACGTCGGAAATGATATTTATCACTCACTTGTTGGCTGAAGAACCTGAGAAACTTGCAGGGCCATTACTGGCTGACACTTATGTGACCTTGTTAAAAGGTCGTAATGCTTGGTATGGCCAGATGTTAGCTAAGGGTCAATTAAGACCAGACATGGGTGACAGCATTAGTGGCAAAGGAATGATTCAGGGTGTGTCAGCAGTGGAGGCGTTCTTTGAACTTCTGAGCCAATCTAGCCTGAATGTGTTGCATCCTGAAGAAAACAAACCTGTTGCTCCTGTAGAACTCTGCCCTATCTTGAAGACACTCTACAAAATTTTGATATCAAGGGAACAGTCATCACAAGCTATTCTGAAAGCCTTGAGGGATGAAAATCTGAATGATCCTCGTGAACGAATTGAGATTGCACAAAGCCATGTTTTCTACAAGCCTTCACTTCTTGGACAGCCCTGA 1398 0.4342 MVGSIMGVVHNGYSNGSVGVQNCNGVEEKLDCLRRLIGKGDGDPLRIVSVGAGAWGSVFAALLQDTYGQFRDKIQIRIWRRAGRAVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLFADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVVNGLPSTETREIFEEISKYWKERITVPIIISLSKGIEAALEPVPHIITPTKMINQATRVPMENILYLGGPNIASEIYNKEYANARICGAEKWRKALAKFLRQPHFIVWDNSDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMIFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGQLRPDMGDSISGKGMIQGVSAVEAFFELLSQSSLNVLHPEENKPVAPVELCPILKTLYKILISREQSSQAILKALRDENLNDPRERIEIAQSHVFYKPSLLGQP* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1142 465 PRINTS NAD-dependent glycerol-3-phosphate dehydrogenase signature 49 66 IPR006168 GO:0004367|GO:0006072|GO:0009331
Gso19g1142 465 PRINTS NAD-dependent glycerol-3-phosphate dehydrogenase signature 270 294 IPR006168 GO:0004367|GO:0006072|GO:0009331
Gso19g1142 465 PANTHER GLYCEROL-3-PHOSPHATE DEHYDROGENASE [NAD(+)] 1 465 - -
Gso19g1142 465 Gene3D - 139 273 - -
Gso19g1142 465 Gene3D - 27 108 - -
Gso19g1142 465 Gene3D - 277 437 IPR013328 GO:0016491
Gso19g1142 465 Pfam NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 149 251 IPR011128 GO:0016616|GO:0046168|GO:0051287
Gso19g1142 465 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 277 432 IPR008927 -
Gso19g1142 465 PANTHER GLYCEROL-3-PHOSPHATE DEHYDROGENASE 1 465 - -
Gso19g1142 465 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 45 277 IPR036291 -
Gso19g1142 465 Pfam NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 277 431 IPR006109 GO:0004367|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1142 Gso-Chr19 39640066 39644679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1142 1 465 Acyl Lipid Metabolism Gene Families AT2G41540 87.312 0.0 812
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1142 K00006 - gmx:100781512 928.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1142 19 39640066 39644679 Gso3g1145 3 36822000 36826133 GST
Gso19g1142 19 39640066 39644679 Gso2g1590 2 36114075 36120884 PCT
Gso19g1142 19 39640066 39644679 Gso10g0994 10 25307444 25313510 PCT
Gso2g1590 2 36114075 36120884 Gso19g1142 19 39640066 39644679 PCT
Gso10g0994 10 25307444 25313510 Gso19g1142 19 39640066 39644679 PCT