Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1115 ATGGATCATATTAGTAATGAGGCTAGTATTGACCGTTTTCCAATTGGTCCTTCTGACATTCTTGGTAGGACAATTGCTTTCAGGGTTCTTTTTTGCAAGTCTATCTCACATTTTAGGCACCACATATTTCTAGTGTTGTTAGATCTCTTCTATAGATTTAGGGGGGGGTTGGCATCCTTTATATCATGGTTGCATCCCAGGAACCCTCAGGGGATATTGGCAATGATGACAATTGTTGCTTTCTTGTTGAAACGATACACAAATGTGAAAGCAAGGGCTGAAATGGCATATAGGAGGAAGTTTTGGAGAAACATGATGAGAAGTGCTTTGACCTATGATGAATGGGCTCATGCAGCTAAGATGCTTGATAAAGAGACAACAAAGATGAATGAATCAGACCTTTATGATGTGGAATTGGTGAGGAACAAGCTTCAAGAGCTCCGCCACCGTCGGCAAGAGGGATCTCTTAGAGATATAATGTTTTGTATGCGTGCCGATCTTATTAGAAATTTAGGTAATATGTGTAACCCTGAACTGCACAAGGGTAGGCTTCAGGTGCCTAAATTAATCAAGGAGTACATTGATGAAGTAACGACTCAATTGAGAATGGTCTGTGATTCTGATTCAGAGGAGCTATCATTGGAAGAAAAGCTTGCTTTCATGCATGAAACAAGGCATGCATTTGGGAGGACAGCTTTGCTGTTAAGCGGGGGTGCCTCTCTTGGAGCTTCTCATGTGGGTGTAGTTAAAACAATGGTAGAACATAAACTCATGCCTAGGATAATTGCTGGTTCAAGTGTGGGATCCATTATGTGTGCTGTTGTTGCCACTAGGACTTGGCCTGAGCTCCAGAGCTTTTTTGAGGATTCATGGCACTCGTTGCAATTTTTTGATCAAATGGGTGGGATTTTTGCAGTTGTTAAGAGAGTCACAACATTGGGTGCTGTTCATGAGATCAGACAGTTGCAAATGATGTTGAGGCATCTAACAAGCAATCTTACATTTCAAGAAGCTTATGACATGACAGGTAGAATTCTTGGGATTACAGTTTGTTCCCCAAGGAAGCACGAACCACCTAGATGTCTTAACTACTTGACTTCACCCCATGTGGTTATATGGAGTGCAGTCACCGCTTCTTGTGCCTTCCCTGGCCTTTTTGAGGCTCAAGAATTGATGGCAAAGGATAGAAGTGGAGAGATTATTCCTTACCACCCTCCTTTTAACTTAGGTCCTGAAGAGGGCTCCACACCAGCACGCCGTTGGAGGGATGGTAGCTTGGAGATTGATTTACCTATGATGCAGTTGAAAGAACTATTCAATGTCAATCATTTTATAGTTAGTCAGGCCAACCCTCATATTGCACCATTATTGAGATTGAAAGAATTTGTGCGCACTTATGGGGGCAACTTCGCTGCCAAGCTTGCTCATCTTGTGGAGATGGAGGTGAAACATAGGTGTAATCAAATACTGGAACTTGGTTTTCCATTAGGTGGACTTGCTAAGTTGTTTGCTCAAGACTGGGAAGGTGATGTGACTGTTGTTATTCCCGCAACTCTTGCTCAGTACACCAAAATTATACAGAACCCTTCTTATGGAGAGCTTCAAAAGGCAACCAACCAAGGGAGAAGATGTACCTGGGAGAAACTTTCAGCCATAAAAGCAAATTGTGGCATTGAGCTTGCTCTTGATGAGTGTGTGGTGATTCTCAATCATATGAGAAGACTAAAGAGGATTGCTGAGAGAGCTGCTTCTGCTTCTCAAGGTTTGTCCAGCACTGTAAGGTTCAGTGCTTCAAAAAGAATTCCTTCATGGAATTGCATTGCACGAGAGAATTCAACTGGTTCCCTTGAGGACCTTACTGATGTTGCTGCCTCAAAGCATCAAGGCATTAGCAGTTCCTGTGGAACCAATGGCAAAACTTGGAAGACCTACCGTGGCATACTTGATGGAAGTGACAGTGACTCTGAAAGTGTTGATTTGCATTCTTGGACAAGATCTGGTGGGCCTTTGATGAGAACTACTTCAGCAAATATGTTTGTCGATTTTCTTCAAAACTTAGACGTTGATACCGATCAAAACAATAAAGGCTTAGTGAGTCGTGCTAACCCTAATGATTTTCAGTATCGTAGCCCCAGGCTCGCAACACTGGATAGGAACTCTGATAGCACAGAATCTGAGCCAAGGGAAATTGGCAACAGGGTTTTCAATGTGTCCAGCATACTTGTGACCGAAGGTGATCTTTTGCAGCCTGAAAGGATCCATAATGGGATTGTGTTTAATGTTGTCAAGAAAGAAGACTTGTCACCCTTAAGTGGTAGCAGTCATGATTTTGAAAATTACAACATTGAAGTTGCTGAATGTGTCCAAGATGAGTGTCCAGGGAAGGAGATAGATGCTGCTAGCTCAGCTTCTGAACATGGAGATGATGAAGAATCCACAGTAGCTAGGTCCTTAACTGAAACTCAAGACTACAATTCCATGGATCATCATTCGGGTATGGATCAGAGCATTGTTGACAGTTAG 2523 0.4257 MDHISNEASIDRFPIGPSDILGRTIAFRVLFCKSISHFRHHIFLVLLDLFYRFRGGLASFISWLHPRNPQGILAMMTIVAFLLKRYTNVKARAEMAYRRKFWRNMMRSALTYDEWAHAAKMLDKETTKMNESDLYDVELVRNKLQELRHRRQEGSLRDIMFCMRADLIRNLGNMCNPELHKGRLQVPKLIKEYIDEVTTQLRMVCDSDSEELSLEEKLAFMHETRHAFGRTALLLSGGASLGASHVGVVKTMVEHKLMPRIIAGSSVGSIMCAVVATRTWPELQSFFEDSWHSLQFFDQMGGIFAVVKRVTTLGAVHEIRQLQMMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFPGLFEAQELMAKDRSGEIIPYHPPFNLGPEEGSTPARRWRDGSLEIDLPMMQLKELFNVNHFIVSQANPHIAPLLRLKEFVRTYGGNFAAKLAHLVEMEVKHRCNQILELGFPLGGLAKLFAQDWEGDVTVVIPATLAQYTKIIQNPSYGELQKATNQGRRCTWEKLSAIKANCGIELALDECVVILNHMRRLKRIAERAASASQGLSSTVRFSASKRIPSWNCIARENSTGSLEDLTDVAASKHQGISSSCGTNGKTWKTYRGILDGSDSDSESVDLHSWTRSGGPLMRTTSANMFVDFLQNLDVDTDQNNKGLVSRANPNDFQYRSPRLATLDRNSDSTESEPREIGNRVFNVSSILVTEGDLLQPERIHNGIVFNVVKKEDLSPLSGSSHDFENYNIEVAECVQDECPGKEIDAASSASEHGDDEESTVARSLTETQDYNSMDHHSGMDQSIVDS* 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1115 840 SUPERFAMILY FabD/lysophospholipase-like 229 575 IPR016035 -
Gso19g1115 840 MobiDBLite consensus disorder prediction 817 840 - -
Gso19g1115 840 Gene3D Cytosolic phospholipase A2 catalytic domain 229 307 - -
Gso19g1115 840 Pfam Patatin-like phospholipase 233 424 IPR002641 GO:0006629
Gso19g1115 840 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 233 436 IPR002641 GO:0006629
Gso19g1115 840 MobiDBLite consensus disorder prediction 793 840 - -
Gso19g1115 840 MobiDBLite consensus disorder prediction 801 816 - -
Gso19g1115 840 Gene3D Cytosolic phospholipase A2 catalytic domain 308 493 - -
Gso19g1115 840 PANTHER TRIACYLGLYCEROL LIPASE-RELATED 1 714 - -
Gso19g1115 840 Pfam Domain of unknown function (DUF3336) 95 226 IPR021771 GO:0004806|GO:0006629
Gso19g1115 840 PANTHER NEUROPATHY TARGET ESTERASE/SWISS CHEESE D.MELANOGASTER 1 714 - -
Gso19g1115 840 CDD Pat_SDP1-like 163 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1115 Gso-Chr19 39328444 39333503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1115 4 801 Acyl Lipid Metabolism Gene Families AT5G04040 73.457 0.0 1206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1115 K14674 - gmx:100816093 1677.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1115 19 39328444 39333503 Gso3g1121 3 36527275 36531140 GST
Gso19g1115 19 39328444 39333503 Gso10g0975 10 24243768 24248723 PCT