Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1114 ATGCACAACATGAGCACTCTCGTTTTCTTTATCCTTCTTTCAACGCTACTAAGTGTTTGTTACGGTGGTCGCGACTTAGTAGATAAAAACCCGTTCACCGAGCAGGCTTACGTGGCACGCTACTGGGACAAACATGTTGGCAACAACTTGCCAAAGCCATCGTTTCTTCTCTCCAAAGCCTCTCCAATGAGCGCTTCCGATACGGCGTCGTTCGCGAACCTCGCCGCCACCAACTCCCTCTCCACGCGGCTGCCGGAGTTCTGCTCCGCGGCGCACCTCCTCTGCTTCCCGGAGGTCCGGCCCAGCCTCGAGAAACACACCGGAGACTCCGATTTCCAGACCTACAACGACGGCCAGAACTTCACCAACTACGGCACCGACTTCGCCGGCGGCCTCGACACCTTCAAGAACTACTCCAACGACCTCTTCAGCACTCCGGTGAACGACTTCCGCCGCTACAGCCGCGGCGCCGCCGGCCACGAGGAAAGATTTTCCGCCTACGCCGGCGACACCAACGTCGCCGACCAGAGCTTCAGCACCTACGGCACCAACGCCGCCGGCGGCTCCGGCGAGTTCAAAAACTACTCCAGCAACTCCAACGTCCCCGACCTACGCTTCACCACCTACTCCGACAGCACCGGCGGGAGAACGCAATCTTTCTCCAGCTACAGCGAAGACGGCAACGCCGGCGGCCAGACCTTCCAATCCTACGGAAAGAACTCCGCCGGCGCGGCGAACGGCTTCGCCGCCTACGGCACAGACTCCAACGTCGCCTCTTCAGATTTCACGAACTACGGAAAGGGAGGTGCGGGCCCCAACGACACGTTCACGAATTACGGCGTTAACATGAACAACCCTACGGAGACGTTTCAGAGCTACGCAGACGGAACCGTTGGTGGAACGCAGAGTTTTTCCAACTACAGAGACCAAGCTAACGTAGGTGCTGACTCGTTCCAATCCTACGCTAAGAACACGTTAGGGTCCGAAGCGGATTTTAAAAACTACGGGAATTCGTTCAACCCTGGTTCGGACACTTTCAAAGGCTACGCTAAAGGCGCAGAAGATAACAAGGTTGGCTTCACAACCTACAGCGCTAACACAAACGCTACCTTTAAAGATTACGCCAAACACGGCGTTTCCTTTGCTAGTTACAACGTCTCTTCGGAATCTAAAACAGTCAGTAGCAGTGTGGTAAAAAGGTGGGTTGAACCGGGTAAGTTTTTTCGCGAGACCATGCTTAAGGAAGGCACTGTTATGCCCATGCCCGATATAAGGGATAAGATGCCAAAAAGGTCGTTTTTGCCCCGCGCTATTTTAACCAAATTGCCCTTCTCGTCTGCGAAGGTTGACGAGTTGAAGCGTGTGTTTAAGGTGTCTGAGAACTCATCAATGGACAAAATGATCATGGACTCGTTGGGAGAGTGCGAGAGGGAACCCAGCGTGGGTGAGACCAAACGCTGTGTGGGTTCCGTGGAGGACATGATTGACTTTTCAACCTCCGTTTTGGGCCGCAATGTGGCAGTTTGGACCACAGAGAATGTAAAAGGGTCCAATAAGAATGTGATGGTGGGTCGGGTTAAAGGGATGAATGGTGGGAAGGTGACAAAATCGGTGTCGTGCCACCAGAGCTTGTTCCCTTATTTGCTTTACTACTGCCACTCCGTTCCTAAGGTTCGGGTCTACGAAGCGGATCTTTTGGACCCCGAATCTAAGGCCAAGATTAACCACGGTGTTGCTATCTGCCACTTGGACACAACTGCGTGGAGCCCCACCCACGGTGCATTCTTGGCACTCGGGTCGGGTCCGGGTAGAATTGAAGTGTGTCACTGGATCTTCGAGAATGACTTGACATGGACTATTGCTGACTGA 1869 0.5383 MHNMSTLVFFILLSTLLSVCYGGRDLVDKNPFTEQAYVARYWDKHVGNNLPKPSFLLSKASPMSASDTASFANLAATNSLSTRLPEFCSAAHLLCFPEVRPSLEKHTGDSDFQTYNDGQNFTNYGTDFAGGLDTFKNYSNDLFSTPVNDFRRYSRGAAGHEERFSAYAGDTNVADQSFSTYGTNAAGGSGEFKNYSSNSNVPDLRFTTYSDSTGGRTQSFSSYSEDGNAGGQTFQSYGKNSAGAANGFAAYGTDSNVASSDFTNYGKGGAGPNDTFTNYGVNMNNPTETFQSYADGTVGGTQSFSNYRDQANVGADSFQSYAKNTLGSEADFKNYGNSFNPGSDTFKGYAKGAEDNKVGFTTYSANTNATFKDYAKHGVSFASYNVSSESKTVSSSVVKRWVEPGKFFRETMLKEGTVMPMPDIRDKMPKRSFLPRAILTKLPFSSAKVDELKRVFKVSENSSMDKMIMDSLGECEREPSVGETKRCVGSVEDMIDFSTSVLGRNVAVWTTENVKGSNKNVMVGRVKGMNGGKVTKSVSCHQSLFPYLLYYCHSVPKVRVYEADLLDPESKAKINHGVAICHLDTTAWSPTHGAFLALGSGPGRIEVCHWIFENDLTWTIAD* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1114 622 ProSiteProfiles BURP domain profile. 407 621 IPR004873 -
Gso18g1114 622 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 6 622 - -
Gso18g1114 622 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 6 622 - -
Gso18g1114 622 Pfam BURP domain 407 619 IPR004873 -
Gso18g1114 622 SMART BURP_2 405 621 IPR004873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1114 Gso-Chr18 20269318 20271711 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1114 - - gmx:100779518 1247.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0275 1 3252398 3255474 Gso18g1114 18 20269318 20271711 PCT
Gso2g0289 2 3131579 3134656 Gso18g1114 18 20269318 20271711 PCT
Gso18g1114 18 20269318 20271711 Gso1g0275 1 3252398 3255474 PCT
Gso18g1114 18 20269318 20271711 Gso2g0289 2 3131579 3134656 PCT