Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0223 ATGGAAAACTCAGACGAACAACTTCCCTTCTCTCCACAAAACCCTAACAATGCCGAAGAAGAAGACGACGACATCGAAGAGCCAGAAGACGAAGACGAAGAAGAGGAGGAGGAGGAGGAGGACGACGACGACGTCGTTTCGCAGGAGCAATCCCCATTGTCGCGGCTGCGCGAGCAGCGTTCGAAGCTGGAAACCCTGTCCCGGCGATTGGCGTCGGAGCTGGTCCCAATCCGAGTCCACGACGTGCTGATTCGCGGCAACACGAAGACGAAGGAGTGGGTGATCGAGGCGGAGCTCAAGCTCCTCGAGGAGGCCACCAACGTGCAGGAGCTCATTCGCGCCTCCGAAATCGCCCTCGCCAGGCTCCGCGGCCTCGAGATTTTCGACACCGCCGAGCTCACGCTCCAGGCCGGTCCGCCGGAGCTGCCTCACACCGCCAATGTCGTCGTCGACGTCGTCGAGTCCGCCAACAGAATCTCCGGCGATTTCGGCGTTTACACCAAACCCGCGACTAGTTCTTGGTCTGCTGAAGGTGGTCTTAAGTACAAAAACTTATTAGGTTATGGTGATCTATGGGATGCCTCGTTGGCCTATGGTGCCAACCAAACAACAGAGGTAAGTGTAGGAGTGTATGCCCCTCGACTGAAAGGATTGTCAACCCCCTTTGTAGCACGACTATCCATGCTTTCTCAAGATTGGCAAGAGTTTTCTTCATATAAAGAGCAGTTGCTAGGCTTGTCTCTTGGCTTAATCTCAACAAGGCACCATGACTTAGTCTACACTCTTGGATGGCGTACCTTGACTGATCCATCACAAATGTCATCCAGGTCTATAAGGAGGCAACTTGGGCATGGTTTACTATCATCCTTGAAGTATACATTTAAAATTGACAGGAGAAACTCACCAATTAGGCCTACAAATGGATATGCTTTTCTTTCTACCACTCACTTTGGTGGCCTTACACCAGATCATCGGAGCTTGCGATTTCTGCGCCAGGAATTTGATGTTCGCTGTGCCATCCCCTTTGGGTTTTATAATACGGCACTTAACCTTGGGATTTCTGCCGGTGCTGTTTTTCCATGGGGGCATGGCTTCATGAACAAGCCATCTCCGCTTCCTGAAAGGTTTTATTTGGGTGGTGATTTCTCTCCAGTTTGCACCCTTGGAGGACCAATAACATTGTGGGGATTTAAAACTAGGGGATTAGGTCCTACTGAACCACGAAGACGAAGTAGAGATGGAATTATTGATGACAGTGATGATTCCTCTAGATGGGACTTCATTGGAGGAGATCTAGCTGTTACTGCATTTGCAGACCTGTCTTTTGATCTTCCAATTAGGTGGTTGAGAGATCATGGAATTCATGGTCATGTTTTTGCTGGTGCTGGGAATACTGCTAAATTAACTCAGAATGAATATAAGCACTTTTCACCTCGGAAGTTCTTAGAATCCTTTCGAACATCTGTGGGATGTGGATTTGTTGTTCCCACTAGACTTTTTCGCCTAGAGGGTAATTTCTATTACATACTCAAGCAGAATGAGCATGATCGTGGGAAAACTGGATTTAGGTTCAGCTTCTCGGCTCCTTCTTAG 1593 0.4896 MENSDEQLPFSPQNPNNAEEEDDDIEEPEDEDEEEEEEEEDDDDVVSQEQSPLSRLREQRSKLETLSRRLASELVPIRVHDVLIRGNTKTKEWVIEAELKLLEEATNVQELIRASEIALARLRGLEIFDTAELTLQAGPPELPHTANVVVDVVESANRISGDFGVYTKPATSSWSAEGGLKYKNLLGYGDLWDASLAYGANQTTEVSVGVYAPRLKGLSTPFVARLSMLSQDWQEFSSYKEQLLGLSLGLISTRHHDLVYTLGWRTLTDPSQMSSRSIRRQLGHGLLSSLKYTFKIDRRNSPIRPTNGYAFLSTTHFGGLTPDHRSLRFLRQEFDVRCAIPFGFYNTALNLGISAGAVFPWGHGFMNKPSPLPERFYLGGDFSPVCTLGGPITLWGFKTRGLGPTEPRRRSRDGIIDDSDDSSRWDFIGGDLAVTAFADLSFDLPIRWLRDHGIHGHVFAGAGNTAKLTQNEYKHFSPRKFLESFRTSVGCGFVVPTRLFRLEGNFYYILKQNEHDRGKTGFRFSFSAPS* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0223 530 Coils Coil 53 73 - -
Gso18g0223 530 Gene3D membrane protein fhac 76 155 - -
Gso18g0223 530 Pfam Omp85 superfamily domain 184 527 IPR000184 GO:0019867
Gso18g0223 530 MobiDBLite consensus disorder prediction 17 47 - -
Gso18g0223 530 PANTHER OUTER MEMBRANE OMP85 FAMILY PROTEIN 14 528 - -
Gso18g0223 530 MobiDBLite consensus disorder prediction 1 16 - -
Gso18g0223 530 MobiDBLite consensus disorder prediction 1 59 - -
Gso18g0223 530 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 14 528 IPR039910 -
Gso18g0223 530 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 169 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0223 Gso-Chr18 1912483 1917342 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0223 K07277 - gmx:100785408 991.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0223 18 1912483 1917342 Gso18g0223 18 1912483 1917342 ECH
Gso18g0223 18 1912483 1917342 Gso13g1398 13 29514395 29519074 GST
Gso18g0223 18 1912483 1917342 Gso14g0487 14 4615712 4619807 PCT
Gso14g0487 14 4615712 4619807 Gso18g0223 18 1912483 1917342 PCT