Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1398 ATGGAAAATTCAGACGAACAACTTCCCTTCTCTCCACCAAACCCTAACAATGCCGAAGAAGACGACGAAATCGACGAACCAGAAGACGAAGACGAAGAAGAGGAGGAAGACGACGACGACGACGATGTCGTGTCGCAGGAGCAATCCCCGTTGTCGCGGCTGCGCGAGCAGCGTTCGAAGTTAGAAACCCTGTCCCGGCGATTGGCGTCGGAGCTGGTCCCAATCCGAGTCCACGACGTGCTGATTCGCGGCAACACGAAGACGAAGGCGTGGCTGATCGAGGCGGAGCTCAAGCTCCTCGAGGAGGCCACCACCGTGCAGGAGCTAATTCGCGCCTCCGAAATCGCCCTCGCCAGGCTCCGTGGCCTCGAGATTTTCGACACCGCCGAGCTTACGCTCCAGGCCGGGCCGCCGGAGCTTCCTCACACCGCCAATGTTATCGTCGACGTCGTCGAGACCGCCAACAAAATCTCCGGTGATTTCGGCGTTTACACCAAACCCGCGACTAGTTCTTGGTCTGCTGAAGGTGGTCTTAAGTACAAAAACTTGTTAGGTTATGGTGATCTATGGGATGCCTCTTTGGCCTATGGTGCCAACCAAACAACAGAGGTAAGTGTAGGAGTGTATGCCCCTCGACTGAAAGGATTGCTAACCCCTCTTGTAGCACGACTATCCATGCTTTCCCAAGATTGGCAAGAGTTTTCTTCATACAAAGAGCAGTTGTTAGGCTTGTCTCTTGGCTTAATCTCAGCAAGGCATCATGACTTAGCCTACACTCTTGGATGGCGTACCTTGACTGATCCATCACAAATGTCATCCAGGTCTATAAGGAGGCAACTTGGGCATGGTTTAGTATCATCTTTGAAGTATACATTTAAAATTGACAGGAGAAACTCACCTATTAGGCCTACAAAGGGATATGCTTTTCTATCTACCACTCACTTTGGTGGCCTTACACCAGATCCTCGGAGCTTGCGATTTCTGCGCCAGGAATTTGATGTTCGCTGTGTCATCCCCTTTGGGTTTTATAATACAGCACTTAACCTTGGGATTTCTGCTGGTGCTGTTTTTCCATGGGGGCATGGCTTCATGAACAAGCCATCTCCGCTTCCTGAAAGGTTTTATTTGGGTGGTGATTTCTCTCCAGTTTGCACTCTAGGAGGGCCAATAACATTGTGGGGATTTAAAACTAGGGGATTAGGTCCTACTGAACCACAAAGGCGAAGTAGAGATGGAATTATTGATGACAATGATGATTCCTCTAGATGGGACTTCATTGGAGGAGATCTAGCTGTTACTGCATTTGCAGACTTGTCTTTTGATCTTCCAGTTAGGTGGTTGAGAGATCATGGAATTCATGGTCATGTTTTTGCTGGTGCTGGGAATACTGCTAAATTAACTCAGAATGAATATAAGCACTTTTCACCTCGGAAGTTCTTAGAATCCTTTCGAACATCGGTGGGATGTGGATTTGTTGTTCCTACTAGACTTTTTCGCCTAGAGGGTAATTTCTATTACATACTCAAGCAGAATGAGCATGATCGTGGGAAAACTGGATTTAGGTTCAGCTTCTCAGCTCCTTCTTAG 1587 0.4833 MENSDEQLPFSPPNPNNAEEDDEIDEPEDEDEEEEEDDDDDDVVSQEQSPLSRLREQRSKLETLSRRLASELVPIRVHDVLIRGNTKTKAWLIEAELKLLEEATTVQELIRASEIALARLRGLEIFDTAELTLQAGPPELPHTANVIVDVVETANKISGDFGVYTKPATSSWSAEGGLKYKNLLGYGDLWDASLAYGANQTTEVSVGVYAPRLKGLLTPLVARLSMLSQDWQEFSSYKEQLLGLSLGLISARHHDLAYTLGWRTLTDPSQMSSRSIRRQLGHGLVSSLKYTFKIDRRNSPIRPTKGYAFLSTTHFGGLTPDPRSLRFLRQEFDVRCVIPFGFYNTALNLGISAGAVFPWGHGFMNKPSPLPERFYLGGDFSPVCTLGGPITLWGFKTRGLGPTEPQRRSRDGIIDDNDDSSRWDFIGGDLAVTAFADLSFDLPVRWLRDHGIHGHVFAGAGNTAKLTQNEYKHFSPRKFLESFRTSVGCGFVVPTRLFRLEGNFYYILKQNEHDRGKTGFRFSFSAPS* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1398 528 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 167 526 - -
Gso13g1398 528 Coils Coil 51 71 - -
Gso13g1398 528 MobiDBLite consensus disorder prediction 1 57 - -
Gso13g1398 528 MobiDBLite consensus disorder prediction 18 45 - -
Gso13g1398 528 PANTHER OUTER MEMBRANE OMP85 FAMILY PROTEIN ISOFORM 1 18 526 - -
Gso13g1398 528 Gene3D membrane protein fhac 74 153 - -
Gso13g1398 528 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 18 526 IPR039910 -
Gso13g1398 528 Pfam Omp85 superfamily domain 182 525 IPR000184 GO:0019867
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1398 Gso-Chr13 29514395 29519074 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1398 K07277 - gmx:100804873 998.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0223 18 1912483 1917342 Gso13g1398 13 29514395 29519074 GST
Gso13g1398 13 29514395 29519074 Gso14g0487 14 4615712 4619807 PCT
Gso14g0487 14 4615712 4619807 Gso13g1398 13 29514395 29519074 PCT