Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0480 ATGATCACTGGTAAGGATATTTATGATGTTTTCGCGGCTATTGTGCCCCTCTACGTTGCTATGATATTAGCATACGGCTCAGTTCGGTGGTGGAAAATTTTCACACCTGATCAATGTTCTGGCATAAACCGCTTCGTTGCTGTGTTCGCAGTTCCACTTCTTTCTTTCCACTTCATCTCCTCCAATGACCCTTATGCTATGAACTACCACTTCATAGCAGCTGATTGTCTTCAAAAAGTTGTCATTTTGGGTGCTCTCTTTCTATGGAACACCTTCACAAAACATGGTAGCCTAGACTGGACAATCACCCTCTTCTCACTTTCAACCCTTCCAAACACACTTGTCATGGGGATCCCTCTATTGAAGGCCATGTATGGAGACTTCTCAGGGAGCCTCATGGTCCAAATTGTGGTGTTGCAAAGTGTGATATGGTATACCCTCATGCTGTTCATGTTTGAATATAGAGGTGCAAAACTCCTCATCACAGAACAGTTCCCTGAGACTGCAGGCTCCATAACTTCCTTCAGGGTTGACTCAGATGTTGTCTCACTCAATGGTAGAGAGCCACTTCAAACAGATGCTGAGATAGGAGAAGATGGAAAACTTCATGTGGTTGTTAAAAGATCAGCAGCTTCTTCCATGATATCTTCATTCAACAAGTCTCATTTAACTTCCATGACACCAAGAGCATCTAACCTCACTGGGGTTGAGATCTATTCTGTTCAGTCATCAAGAGAACCAACCCCAAGAGCTTCGAGTTTCAACCAAACGGATTTCTATGCCATGTTCGCAAGCAAGGCACCGAGTCCAAAACATGGCTACACAAACAGTTTCCAGAGTAATAATGGTGGTATTGGTGACGTTTACTCGTTGCAGTCTTCAAAAGGGGCAACGCCAAGGACTTCTAATTTTGAAGAGGAGATGTTGAAGATGCACAAGAAGAGAGGAGGGAGGAGCATGAGTGGCGAGTTGTTTAATGGGGGTTTGGTTTCTTCTAATTACCCGCCACCGAATCCAATGTTTTCAGGGTCTACGAGTGCTGCTGGTGGCCCCAAGAAGAAAGATAGCAGTGGTGGCGGTGGTGCTGTAGCACCTAACAAGGAGTTACACATGTTTGTTTGGAGTTCAAGTGCATCACCTGTTTCTGAGGGGAATTTGAGGCATGCAGTTAATAGAGCTGCCTCTACTGACTTTGGAACTGTCGATCCTTCTAAGGCTGTTCCACACGAAACTGTTGCCTCAAAAGCTGTTCACGAATTGATTGAGAACATGAGCCCTGGTCGTAGAGGGAGTGGAGAGAGGGAGCCTGAAATGGATGAAGGAGCCAAAATTCCCGCAAGTGGATCTCCATACACTTGCCAGAAGAAGGTGGACATGGAAGATGGCAATGCAAACAAAAACCAACAGATGCCACCTGCAAGTGTCATGACAAGACTTATTCTCATCATGGTTTGGAGGAAACTCATAAGAAATCCTAATACTTACTCCAGTCTTTTGGGACTCACATGGTCTCTCATATCATTTAGGTGGCACATTGAAATGCCAACTATTGTAAAAGGTTCCATCTCAATACTGTCTGATGCTGGTCTAGGAATGGCCATGTTCAGTCTAGGTCTATTCATGGCATTACAACCGAAGATCATTGCCTGTGGAAAATCTGTGGCAGCATTTTCAATGGCTGTTAGGTTCTTGACAGGTCCAGCTGTGATTGCTGCAACCTCAATAGGCATCGGACTCCGTGGAGTTCTTTTGCATGTTGCAATTGTCCAGGCTGCTCTTCCCCAAGGTATCGTTCCCTTTGTGTTTGCCAAAGAATACAATCTCCATGCAGATATACTTAGCACTGCGGTTATATTTGGGATGCTAATTGCATTGCCCATAACCATACTCTACTACGTGCTGCTTGGAGTTTAA 1914 0.4472 MITGKDIYDVFAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFISSNDPYAMNYHFIAADCLQKVVILGALFLWNTFTKHGSLDWTITLFSLSTLPNTLVMGIPLLKAMYGDFSGSLMVQIVVLQSVIWYTLMLFMFEYRGAKLLITEQFPETAGSITSFRVDSDVVSLNGREPLQTDAEIGEDGKLHVVVKRSAASSMISSFNKSHLTSMTPRASNLTGVEIYSVQSSREPTPRASSFNQTDFYAMFASKAPSPKHGYTNSFQSNNGGIGDVYSLQSSKGATPRTSNFEEEMLKMHKKRGGRSMSGELFNGGLVSSNYPPPNPMFSGSTSAAGGPKKKDSSGGGGAVAPNKELHMFVWSSSASPVSEGNLRHAVNRAASTDFGTVDPSKAVPHETVASKAVHELIENMSPGRRGSGEREPEMDEGAKIPASGSPYTCQKKVDMEDGNANKNQQMPPASVMTRLILIMVWRKLIRNPNTYSSLLGLTWSLISFRWHIEMPTIVKGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVAAFSMAVRFLTGPAVIAATSIGIGLRGVLLHVAIVQAALPQGIVPFVFAKEYNLHADILSTAVIFGMLIALPITILYYVLLGV* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0480 637 MobiDBLite consensus disorder prediction 335 351 - -
Gso17g0480 637 MobiDBLite consensus disorder prediction 424 451 - -
Gso17g0480 637 PANTHER AUXIN EFFLUX CARRIER COMPONENT 2 1 637 IPR033526 GO:0010315|GO:0010329
Gso17g0480 637 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 637 - -
Gso17g0480 637 MobiDBLite consensus disorder prediction 335 364 - -
Gso17g0480 637 Pfam Membrane transport protein 10 632 IPR004776 GO:0016021|GO:0055085
Gso17g0480 637 TIGRFAM 2a69: auxin efflux carrier 1 636 IPR014024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0480 Gso-Chr17 4343294 4346400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0480 102 637 Organic Solute Cotransporters AT5G57090 75.588 0.0 775
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0480 K13947 - gmx:100305383 1216.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0480 17 4343294 4346400 Gso17g0480 17 4343294 4346400 ECH
Gso13g0737 13 21657939 21661344 Gso17g0480 17 4343294 4346400 GST
Gso17g0480 17 4343294 4346400 Gso9g0523 9 5778849 5782603 PCT
Gso9g0523 9 5778849 5782603 Gso17g0480 17 4343294 4346400 PCT