Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0349 ATGGAGGAAGTTAACGTTGTGGAAACTAAGGATGGAACTGTCTCAGTAGCTGCTGCGTTTGCTGGTCATCAGGAAGCCGTGCAGGATAGAGACCACAAATTTTTAAGAAAAGCTGTTGAAGAAGCATATAAAGGGGTAGATTGCAAAGATGGAGGCCCTTTTGGTGCTGTTATAGTTCATAATGATGAAATAGTTGCTAGTTGTCACAACATGGTTCTGTGTAACACAGACCCAACTGCTCATGCTGAGGTGACAGCAATAAGAGAGGCTTGTAAGAAGCTTAAGCAGATAGAACTTGCAGATTGTGAAATATATGCTTCTTGTGAACCTTGCCCCATGTGCTTTGGTGCAATCCACCTTTCTCGAATTAAGAGGTTGGTTTATGGAGCGAAGGCTGAGGCAGCAATTGCTATTGGGTTTGATGATTTCATTGCAGATGCACTGCGAGGTACTGGATTCTATCAGAAAGCAACACTGGAAATTAAGAGAGCTGATGGTAATGAGGCCATCATTGCTGAAGAGGTTTTTGAGAAAACAAAGGAAAAATTCCAAATGTATTAG 561 0.4189 MEEVNVVETKDGTVSVAAAFAGHQEAVQDRDHKFLRKAVEEAYKGVDCKDGGPFGAVIVHNDEIVASCHNMVLCNTDPTAHAEVTAIREACKKLKQIELADCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKATLEIKRADGNEAIIAEEVFEKTKEKFQMY* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0349 186 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 81 118 IPR016192 GO:0008270|GO:0016787
Gso17g0349 186 Gene3D Cytidine Deaminase, domain 2 30 186 - -
Gso17g0349 186 SUPERFAMILY Cytidine deaminase-like 24 144 IPR016193 GO:0003824
Gso17g0349 186 PANTHER CYTIDINE/DEOXYCYTIDYLATE DEAMINASE FAMILY PROTEIN 1 185 - -
Gso17g0349 186 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 1 185 - -
Gso17g0349 186 CDD nucleoside_deaminase 35 142 - -
Gso17g0349 186 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 30 129 IPR002125 -
Gso17g0349 186 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 29 143 IPR002125 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0349 Gso-Chr17 3152597 3155576 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0349 - - gmx:100500436 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0870 13 23001503 23004475 Gso17g0349 17 3152597 3155576 GST
Gso17g0349 17 3152597 3155576 Gso15g1535 15 19104528 19108537 PCT
Gso15g1535 15 19104528 19108537 Gso17g0349 17 3152597 3155576 PCT