Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0870 ATGTATTTATTTATTAATATTTACGTATCGACCATATTCTATTTTTTGGTGGACCGCATTCCCCTTCTTCTCCTTCTAACCCAACCTGTTTCTCCGACAATCACATTCAACGCTTCTGTCATGGAAGAAGTTAATGTCGTGGAAACTAAGGATGGAACTGTCTCAGTAGCTGCTGCGTTTGCTGGTCACCAGGAAGCCGTGCAGGATAGAGACCACAAATTTTTAAGCAAAGCAGTTGAAGAAGCATATAAAGGGGTAGATTGTAAAGATGGAGGCCCTTTTGGTGCCGTTATAGTTCATAATGATGAAATAGTTGCTAGTTGTCACAATATGGTTCTGTGTAACACAGACCCAACTGCTCATGCTGAGGTGACAGCAATAAGAGAGGCTTGCAAGAAGCTTAAGCAGATAGAACTTGCTGATTGTGAAATATATGCTTCTTGTGAACCTTGCCCCATGTGCTTTGGTGCAATCCACCTTTCTCGAATTAAGAGGTTGGTTTATGGAGCGAAGGCCGAGGCAGCAATTGCTATTGGGTTTGATGATTTCATTGCCGATGCACTGCGAGGTACTGGATTCTATCAGAAAGCAACATTGGAAATTAAGAGAGCTGATGGTAATGAGGCCATCATTGCTGAAGAGGTTTTTGAGAAAACAAAGGAAAAATTCCAAATGTATTAG 681 0.4141 MYLFINIYVSTIFYFLVDRIPLLLLLTQPVSPTITFNASVMEEVNVVETKDGTVSVAAAFAGHQEAVQDRDHKFLSKAVEEAYKGVDCKDGGPFGAVIVHNDEIVASCHNMVLCNTDPTAHAEVTAIREACKKLKQIELADCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKATLEIKRADGNEAIIAEEVFEKTKEKFQMY* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0870 226 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 121 158 IPR016192 GO:0008270|GO:0016787
Gso13g0870 226 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 69 183 IPR002125 -
Gso13g0870 226 Gene3D Cytidine Deaminase, domain 2 70 226 - -
Gso13g0870 226 PANTHER CYTIDINE/DEOXYCYTIDYLATE DEAMINASE FAMILY PROTEIN 41 225 - -
Gso13g0870 226 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 41 225 - -
Gso13g0870 226 CDD nucleoside_deaminase 75 182 - -
Gso13g0870 226 SUPERFAMILY Cytidine deaminase-like 64 184 IPR016193 GO:0003824
Gso13g0870 226 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 70 169 IPR002125 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0870 Gso-Chr13 23001503 23004475 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0870 - - gmx:100820230 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0870 13 23001503 23004475 Gso17g0349 17 3152597 3155576 GST
Gso13g0870 13 23001503 23004475 Gso15g1535 15 19104528 19108537 PCT
Gso15g1535 15 19104528 19108537 Gso13g0870 13 23001503 23004475 PCT