Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1535 ATGGAGGAAGTTAATGTGGTTCAAACCAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCTATAAAGGGGTAGACTGTGAAGATGGGGGTCCCTTTGGTGCTATTATAGTATGTAATGATGAAATAGTTGCTCGATGTCACAACATGGTTCTGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCTTCTTGTGAACCTTGCCCTATGTGCTTTGGAGCAATTCACCTCTCACGAGTTAAGAGGTTGGTTTATGGAGCAAAGGCAGAGGCAGCAATTGCTATTGGATTCGATGACTTCATTTCAGATGCATTGCGAGGCACTGGATTCTACCAGAAAGCACAATTGGAGATTAAAAGGGCTGATGGCAAAGCGGCAAACATTGCTGAAGAAGTTTTTGAGAGAACCAAGGAAAAATTCCGAATGTATTAA 561 0.4135 MEEVNVVQTKNGTVAVASAFAGHKEAIQQRDHKFLRIAVEEAYKGVDCEDGGPFGAIIVCNDEIVARCHNMVLRNTDPTAHAEVTVIRKACEKLNQIELSDCEIYASCEPCPMCFGAIHLSRVKRLVYGAKAEAAIAIGFDDFISDALRGTGFYQKAQLEIKRADGKAANIAEEVFERTKEKFRMY* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1535 186 Gene3D Cytidine Deaminase, domain 2 22 185 - -
Gso15g1535 186 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 81 118 IPR016192 GO:0008270|GO:0016787
Gso15g1535 186 Coils Coil 154 174 - -
Gso15g1535 186 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 29 143 IPR002125 -
Gso15g1535 186 CDD nucleoside_deaminase 35 142 - -
Gso15g1535 186 PANTHER CYTIDINE/DEOXYCYTIDYLATE DEAMINASE FAMILY PROTEIN 6 185 - -
Gso15g1535 186 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 6 185 - -
Gso15g1535 186 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 30 129 IPR002125 -
Gso15g1535 186 SUPERFAMILY Cytidine deaminase-like 25 145 IPR016193 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1535 Gso-Chr15 19104528 19108537 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1535 - - gmx:100305493 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0870 13 23001503 23004475 Gso15g1535 15 19104528 19108537 PCT
Gso17g0349 17 3152597 3155576 Gso15g1535 15 19104528 19108537 PCT
Gso15g1535 15 19104528 19108537 Gso13g0870 13 23001503 23004475 PCT
Gso15g1535 15 19104528 19108537 Gso17g0349 17 3152597 3155576 PCT