Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1223 ATGATGATGGGAAAAGGTTGGTTTTTGAGATTGGTTATGGTGATTGGTGTGATGGGTTGGTGTTGGTGGTGTGTGGAAGGGCTTGGAGTGAATTGGGGGACTCAAGCCACACACCAGTTGAAGGCAGACACAGTGGTTGAGATGCTGAAGGACAATGGGATCCAAAAGGTGAAACTGTTTGATGCAGATGAGTCTAGCATGAGTGCTCTATCTGGCTCTGGCATTGAAGTCATGGTTGCCATTCCCAATAACCAGCTTGCTGAGATGAATGACTATGATCGTGCCTTGCAGTGGGTCAAGAAGAATGTCACTCGTTACAACTTCAGGGGTGGAATTAACATCAAGTATGTAGCAGTTGGGAACGAGCCATTTTTAAAATCCTACAATGGTTCATTCTTGAACATCACCCTCCCTGCATTACAGAACATTCAAAATGCCCTCAATGACGCAGGCCTAGGGGACTCCATAAAGGCCACAGTGCCCTTAAATGCTGATGTGTATGAGTCTCCACCAAACAACCCTGTGCCGTCAGCAGGAATATTTAGGCCAGATATAAGTGACCTAATGACCCAAATAGTGCAATTTTTGGCAAAGAACAATGCACCATTCACAGTAAACATTTACCCTTTCTTGAGCCTCTATGGGAATGATAATTTCCCCTTTGACTATGCCTTCTTTGATGGTGTGGCCAATCCCATAAATGATAATGGGGTTTCATACACAAATGTTTTTGATGCAAATTTTGATACCTTGGTCTCTGCCCTCGAAAAAGTAGGATATGGGAACATGCCAATTTTGGTAGGAGAGGTGGGGTGGCCCACAGATGGTGACAAAAATGCTAATGTAGGCAATGCATTTAGGTTCTATAATGGGCTTTTACCGAGGCTTGCAATAAACAAAGGGACCCCACTTAGGCCTGGATTTATTGAAGTTTACCTATTTGGGCTCATTGATGAGGATGCCAAGACCATTGCCCCAGGGAACTTTGAGAGACATTGGGGCATTTTTGGGTATGATGGGAAGCCCAAGTTTCCAATGGACCTTTCTGGAAAAGGCCAAAACAAGCTACTAGTTGGTGCACAAAATGTGCACTATCTTGAGCCAAACTGGTGCATGTTTAACCCTGATGCACAGGACCTAAGCAAACTTGCTGATAATATAAACTATGCATGCACCTTTGCTGATTGCACTGCACTTGGATATGGTTCTTCTTGCAACAACTTGGATGCCAATGGAAATGCCTCATATGCATTTAATATGTACTACCAGACACAGGATCAGAATTACATGGCCTGCAATTTTGAAGGCTTGGCAAGACTCACAACAAGCAATATTTCAACACCTACTTGCAATTTTATTGTTCAGATAAATCCTTCCTTGTCCTCTTCTTTAAGGCCCCCAATAGTAGCTTCCTTGTTTGTCACTCTACTACCCTTGATTCTATTTTTGTAG 1452 0.4325 MMMGKGWFLRLVMVIGVMGWCWWCVEGLGVNWGTQATHQLKADTVVEMLKDNGIQKVKLFDADESSMSALSGSGIEVMVAIPNNQLAEMNDYDRALQWVKKNVTRYNFRGGINIKYVAVGNEPFLKSYNGSFLNITLPALQNIQNALNDAGLGDSIKATVPLNADVYESPPNNPVPSAGIFRPDISDLMTQIVQFLAKNNAPFTVNIYPFLSLYGNDNFPFDYAFFDGVANPINDNGVSYTNVFDANFDTLVSALEKVGYGNMPILVGEVGWPTDGDKNANVGNAFRFYNGLLPRLAINKGTPLRPGFIEVYLFGLIDEDAKTIAPGNFERHWGIFGYDGKPKFPMDLSGKGQNKLLVGAQNVHYLEPNWCMFNPDAQDLSKLADNINYACTFADCTALGYGSSCNNLDANGNASYAFNMYYQTQDQNYMACNFEGLARLTTSNISTPTCNFIVQINPSLSSSLRPPIVASLFVTLLPLILFL* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1223 483 SUPERFAMILY (Trans)glycosidases 28 347 IPR017853 -
Gso16g1223 483 ProSitePatterns Glycosyl hydrolases family 17 signature. 263 276 IPR000490 GO:0004553|GO:0005975
Gso16g1223 483 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 5 465 IPR044965 GO:0004553|GO:0005975
Gso16g1223 483 Gene3D Glycosidases 27 355 - -
Gso16g1223 483 PANTHER GLYCOSIDE HYDROLASE, FAMILY 17, X8 5 465 - -
Gso16g1223 483 SMART X8_cls 369 452 IPR012946 -
Gso16g1223 483 Pfam X8 domain 370 438 IPR012946 -
Gso16g1223 483 Gene3D - 366 462 - -
Gso16g1223 483 Pfam Glycosyl hydrolases family 17 28 347 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1223 Gso-Chr16 31563253 31566624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1223 11 456 Miscellaneous Gene Families AT1G64760 73.497 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1223 - - gmx:102666963 976.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1223 16 31563253 31566624 Gso2g0592 2 6180185 6183829 GST
Gso16g0347 16 3906360 3910300 Gso16g1223 16 31563253 31566624 PCT
Gso16g1223 16 31563253 31566624 Gso16g0347 16 3906360 3910300 PCT