Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0347 ATGGAGAAAAACTGGGTTTTGAGATGGATTTTTGTGGTGGGGTTGATGTGTTTGAGTGTGGAAGGGATTGGTGTGAATTGGGGAACTCAAGCAACCCACAAGTTGCCACCAGACACAGTGGTTCAGATGTTGAAGGATAATGGGATTAAGAAAGTGAAGCTTTTTGATTCAGATGACTCCACCATGAGTGCTTTGGCTGGGACTGGGATTGAAGTCATGGTGGCTATCCCTAATAATCAGCTTGCTGAGATGAATGACTATGGCAGGGCCAAACAATGGGTCAAGAAAAATGTCACACGTTACAACTTCAATGGAGGAGTTAATGTCAAGTATGTAGCGGTCGGGAACGAGCCATTTTTAAAATCCTACAACAATTCATTCTTGAATATCACCCTCCCTGCACTGCAGAACATTCAAAATGCCCTTAATGAAGCAGGTCTTGGAGACAAAATAAAGGCTACAGTGCCCTTAAATGCTGATGTGTATCAGTCTCCAGAGAGTAATCCTGTTCCTTCTGCAGGAATATTTAGGCCTGATATCAGTGGTCTCATGACACAGATAGTGCAATTTCTCAGCAAGAATGGTGCCCCATTTACCGTGAACATTTACCCCTTCTTGAGCCTTTATGGTAACGACGATTTTCCTTTCAACTATGCCTTCTTCGACGGTGTGGACAATCCGGTAAACGATAACGGTACTCCATACACCAATGTCTTTGATGCAAATTTTGATACCTTGGTTGCTGCTCTCAAATCAGTTGGGTTTGGGGACCTGCCTATTTTGGTGGGAGAAGTAGGATGGCCTACTGAAGGGGACAAGAATGCCAACGCAGGCAATGCTTTGAGATTCTATAATGGCCTTCTGCCAAGGCTTGCAGCAAATAGAGGCACCCCACGCCGCCCTGGATACATTGAAGTTTATCTATTTGGACTCATCGACGAGGATGCCAAGAGCATTGCGCCAGGAAACTTCGAACGCCATTGGGGAATATTCAGATACGATGGACAACCTAAGTTTCCAATGGACCTTTCTGGTCAGAACCAAAACAAATTTCTCATAGGTGCACAGAACGTGAAATATCTTGCTCCTAGGTGGTGCATGTTTAATCCTGATGCCAAGGATCTCAGCAAACTTCCAGATAACATTAACTATGCTTGCACCTTTGGAGATTGCACCGCGCTTGGATATGGTTCTTCGTGCAACAATTTGGATGCAAATGGGAATGCCTCTTACGCGTTCAATATGTACTTCCAAGTGCAAAATCAGAACCCCATGGCATGCAATTTTCAAGGTTTGGCCAAGCTTACAACGGATAATATCTCAACACCCACTTGCAATTTTATCGTTCAGATAGTTAATTCTTCAGCCTCTTCTTTGATGATGCCCTCACTAGTTGCTATCTTGTTTGTTAGTTTATTCTTGATTCTGTTTTCTTAG 1437 0.4356 MEKNWVLRWIFVVGLMCLSVEGIGVNWGTQATHKLPPDTVVQMLKDNGIKKVKLFDSDDSTMSALAGTGIEVMVAIPNNQLAEMNDYGRAKQWVKKNVTRYNFNGGVNVKYVAVGNEPFLKSYNNSFLNITLPALQNIQNALNEAGLGDKIKATVPLNADVYQSPESNPVPSAGIFRPDISGLMTQIVQFLSKNGAPFTVNIYPFLSLYGNDDFPFNYAFFDGVDNPVNDNGTPYTNVFDANFDTLVAALKSVGFGDLPILVGEVGWPTEGDKNANAGNALRFYNGLLPRLAANRGTPRRPGYIEVYLFGLIDEDAKSIAPGNFERHWGIFRYDGQPKFPMDLSGQNQNKFLIGAQNVKYLAPRWCMFNPDAKDLSKLPDNINYACTFGDCTALGYGSSCNNLDANGNASYAFNMYFQVQNQNPMACNFQGLAKLTTDNISTPTCNFIVQIVNSSASSLMMPSLVAILFVSLFLILFS* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0347 478 ProSitePatterns Glycosyl hydrolases family 17 signature. 258 271 IPR000490 GO:0004553|GO:0005975
Gso16g0347 478 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 2 466 IPR044965 GO:0004553|GO:0005975
Gso16g0347 478 Pfam Glycosyl hydrolases family 17 23 342 IPR000490 GO:0004553|GO:0005975
Gso16g0347 478 Pfam X8 domain 365 433 IPR012946 -
Gso16g0347 478 SUPERFAMILY (Trans)glycosidases 23 342 IPR017853 -
Gso16g0347 478 PANTHER GLYCOSIDE HYDROLASE, FAMILY 17, X8 2 466 - -
Gso16g0347 478 Gene3D Glycosidases 21 351 - -
Gso16g0347 478 SMART X8_cls 364 447 IPR012946 -
Gso16g0347 478 Gene3D - 361 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0347 Gso-Chr16 3906360 3910300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0347 6 475 Miscellaneous Gene Families AT1G64760 74.043 0.0 713
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0347 - - gmx:100815300 956.822
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g0347 16 3906360 3910300 Gso16g1223 16 31563253 31566624 PCT
Gso16g0347 16 3906360 3910300 Gso2g0592 2 6180185 6183829 PCT
Gso16g1223 16 31563253 31566624 Gso16g0347 16 3906360 3910300 PCT
Gso2g0592 2 6180185 6183829 Gso16g0347 16 3906360 3910300 PCT