Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0957 ATGGCTCGAAGATCCCTCCCGCTCCTGAAGCACCTCCTCTCGCGGCGGATCCCGGCCCGATCCGTGACGTACATGCACCGGCCGGGCGACGGGTCGCCGCGGCCGGTGACACTGATCCCGGGCGACGGGATCGGGCCGATGGTGACTGGCGCGGTGGAGCAGGTCATGGAGGCCATGCACGCGCCCGTCTACTTCGAGAAGTTCGAGGTCCACGGCAACATGAAGGCCGTGCCGCCGGAGGTCCTCGATTCGATTCGGAAGAACAAGGTCTGTCTCAAGGGAGGACTCGTTACCCCCATGGGCGGTGGCGTCAGCTCCCTCAATGTTCAGCTCCGGAAAGAGCTTGATCTCTATGCTTCTCTTGTTAATTGTTTCAATCTCCCTGGCCTTCCCACGCGCCATGATAATGTGGATATCGTTGTCATCAGGGAGAACACCGAAGGCGAATACTCTGGCCTCGAACACGAGGTCGTTCCCGGCGTTGTTGAAAGCCTTAAGGTAATAACGAAGTTCTGTTCAGAGCGAATTGCTAAATATGCATTCGAGTATGCTTACCTGAATAACAGAAAGAAGGTGACTGCCGTGCACAAAGCAAATATTATGAAGCTTGCAGATGGTTTATTCTTGGAATCTTGTCGAGAGGTTGCTACAAAGTACCCTGGAATAAAGTATAACGAAATTATTGTGGATAACTGCTGTATGCAGCTTGTTTCAAAGCCTGAACAGTTTGATGTCATGGTTACCCCAAATCTTTATGGAAATCTAGTTGCAAATACTGCAGCAGGCATTGCTGGAGGCACTGGAGTCATGCCAGGAGGTAACGTTGGGGCTGAGCACGCTGTGTTTGAGCAAGGTGCGTCAGCAGGAAATGTTGGTAGTGATAAAATAAGGGAACAAAAGAAAGCCAATCCAGTGGCACTTCTTCTCTCGTCAGCTATGATGCTTAGGCATCTCCAGTTTCCTGCATTTGCTGACCGTTTGGAAACTGCTGTGGAAAAAGTCATTTTGGAGGGCAAATGCCGAACAAAGGATCTTGGAGGGACAAGCACCACCCAAGAGGTTGTGGATGCAGTGATAGATGCTTTAGATTGA 1092 0.5128 MARRSLPLLKHLLSRRIPARSVTYMHRPGDGSPRPVTLIPGDGIGPMVTGAVEQVMEAMHAPVYFEKFEVHGNMKAVPPEVLDSIRKNKVCLKGGLVTPMGGGVSSLNVQLRKELDLYASLVNCFNLPGLPTRHDNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGAEHAVFEQGASAGNVGSDKIREQKKANPVALLLSSAMMLRHLQFPAFADRLETAVEKVILEGKCRTKDLGGTSTTQEVVDAVIDALD* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0957 363 Pfam Isocitrate/isopropylmalate dehydrogenase 36 358 IPR024084 -
Gso16g0957 363 Gene3D Isopropylmalate Dehydrogenase 18 362 - -
Gso16g0957 363 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 34 362 - -
Gso16g0957 363 PANTHER NAD-DEPENDENT ISOCITRATE DEHYDROGENASE C,1 19 360 - -
Gso16g0957 363 SMART Iso_dh_2 35 358 IPR024084 -
Gso16g0957 363 TIGRFAM mito_nad_idh: isocitrate dehydrogenase, NAD-dependent 33 361 IPR004434 GO:0006099
Gso16g0957 363 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 19 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0957 Gso-Chr16 26528597 26532088 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0957 K00030 - gmx:100777867 710.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0356 2 3893733 3898294 Gso16g0957 16 26528597 26532088 GST
Gso11g0714 11 6347423 6351590 Gso16g0957 16 26528597 26532088 PCT
Gso16g0957 16 26528597 26532088 Gso11g0714 11 6347423 6351590 PCT