Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0714 ATGGCGACGACACGATCCGCGCCGCTCCTCAAGCACCTCCTCACCCGTCTCAACCCTTCTCGCTCCGTCACGTACATGCCCCGTCCCGGCGACGGCACCCCTCGCGGCGTGACGCTGATCCCGGGCGACGGAATCGGGCCTCTAGTAACCGGCGCGGTGGAGCAGGTGATGGAGGCGATGCACGCGCCGCTGTACTTCGAGAAGTACGAGGTGCACGGCGACATGAAGGCGGTGCCGGCGGAGGTGCTGGAATCGATCAGGAAGAACAAGGTATGTCTGAAGGGAGGACTGGCCACTCCCATGGGCGGTGGAGTGAACTCGCTGAACGTGCAGCTGAGGAAGGAGCTCGATCTCTACGCCTCGCTCGTGAACTGCTTCAACCTCCCTGGCCTCCCCACGCGCCACGACAACGTTGACATCGTCGTCATCAGGGAGAACACCGAGGGCGAGTACTCCGGCCTCGAACACGAGGTCGTCCCCGGCGTGGTCGAAAGCCTCAAGTTCTGCTCAGAGCGCATTGCTAAATATGCTTTTGAGTATGCTTACCTAAATAACAGAAAGAAGGTGACTGCTGTGCACAAAGCAAACATTATGAAACTTGCAGATGGTTTATTCTTGGAATCTTGTCGAGAGGTTGCCACAAGGTATCCTGGAATCAAGTACAATGAAATTATTGTAGACAACTGCTGCATGCAGCTTGTTTCAAAACCGGAGCAGTTTGATGTCATGGTAACCCCCAATCTTTATGGAAATCTTGTTGCAAATACAGCGGCAGGTATTGCTGGAGGCACTGGAGTCATGCCGGGAGGTAATGTTGGGGCTGATCACGCTGTGTTTGAACAAGGTGCTTCAGCAGGAAATGTTGGCAATGATAAAGTAGTAGAACAACAGAAAGCGAACCCAGTGGCACTCCTTCTCTCGTCGGCCATGATGCTTAGACATCTCCAGTTTCCTGCATTTGCTGACCGATTGGAAACTGCCGTTAAAAAAGTGATTCTGGAAGGCAAATATCGGACAAAGGACCTTGGAGGGACAAGCACCACCCAAGAGGTTGTTGATGCAGTGATAGATGCTTTAGACTGA 1083 0.5355 MATTRSAPLLKHLLTRLNPSRSVTYMPRPGDGTPRGVTLIPGDGIGPLVTGAVEQVMEAMHAPLYFEKYEVHGDMKAVPAEVLESIRKNKVCLKGGLATPMGGGVNSLNVQLRKELDLYASLVNCFNLPGLPTRHDNVDIVVIRENTEGEYSGLEHEVVPGVVESLKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATRYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGNDKVVEQQKANPVALLLSSAMMLRHLQFPAFADRLETAVKKVILEGKYRTKDLGGTSTTQEVVDAVIDALD* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0714 360 Gene3D Isopropylmalate Dehydrogenase 25 359 - -
Gso11g0714 360 TIGRFAM mito_nad_idh: isocitrate dehydrogenase, NAD-dependent 33 358 IPR004434 GO:0006099
Gso11g0714 360 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 36 359 - -
Gso11g0714 360 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 19 357 - -
Gso11g0714 360 SMART Iso_dh_2 36 355 IPR024084 -
Gso11g0714 360 Pfam Isocitrate/isopropylmalate dehydrogenase 37 355 IPR024084 -
Gso11g0714 360 PANTHER NAD-DEPENDENT ISOCITRATE DEHYDROGENASE C,1 19 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0714 Gso-Chr11 6347423 6351590 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0714 K00030 - gmx:100778831 699.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0714 11 6347423 6351590 Gso11g0714 11 6347423 6351590 ECH
Gso11g0714 11 6347423 6351590 Gso2g0356 2 3893733 3898294 PCT
Gso11g0714 11 6347423 6351590 Gso16g0957 16 26528597 26532088 PCT
Gso2g0356 2 3893733 3898294 Gso11g0714 11 6347423 6351590 PCT
Gso16g0957 16 26528597 26532088 Gso11g0714 11 6347423 6351590 PCT