Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso15g1408 | ATGACCAACGACAACATCGCCGTGACAGATCTCACTTCTGCCCTCAATGAAGAGAATCGCGCCGACCTAGTCAATGCTCTCAAGAGCAAGATTCAGAGTCTGGCTGGGGCGCATTCTGATGTTCTAGAGACTCTATCCCCGAATGTCAGGAAGCGTGTTGAATCTCTTAGAGAAATTCAGGGTAAACATGATGAACTAGAGGCAGACTTCTTGAAGGAGAGAGAAGCTCTTGAAGCAAAGTACCAAAAACTGTATCAGCCATTGTACACAAAGCGCTATGAAATCGTAAATGGTGTTACTGAAGTGGAAGGGGCAGCAAATGAAGCAACAGATGAATCAGAAGAGAATAAAGAGAAAGGAGTGCCTTCTTTTTGGCTCAATGCAATGAAAAATAATGATGTGTTAGCTGAAGAGATTTCAGAGCGTGATGAAGGTGCTCTCAAGTTTCTTAAAGATATCAAGTGGAGCAGGATAGAAAATCCTAAAGGGTTCAAGCTTGATTTCTTCTTTGATACCAATCCTTACTTTTCAAATACCGTCTTGACAAAAACATATCATATGATTGATGAGGATGAACCTATATTGGAGAAAGCAATTGGGACGGAAATTGAATGGTACCCGGGAAAATGCTTGACTCAGAAGGTTTTGAAGAAGAAGCCTAAGAAGGGTTCAAAGAATGCTAAACCAATTACCAAAACTGAAAGCTGTGAAAGCTTCTTCAATTTTTTCAAACCACCAGAAGTCCCTGAAGATGATGCTGACATTGATGAAGATTTGGCTGAAGAACTTCAGAATCAGATGGAACAAGATTATGACATTGGGTCAACATTAAGAGATAAAATTATCCCTCATGCTGTATCATGGTTTACTGGGGAGGCCGCTCAGGGAGATGAGTTTGAAGACCTGGAGGATGATGAGGACGAAGAGGAAGATGAGGACGAAGATGAGGACGAAGAGGATGACGAGGACGAAGACGATGAAGAGGAGGATGACACTAAGACTAAAAAGAAGAAGAGTGGTAAGGCACAGGCTGGTGATGGTGATGGTGAGCGACCTCCAGAGTGCAAGCAGCAGTAA | 1077 | 0.4253 | MTNDNIAVTDLTSALNEENRADLVNALKSKIQSLAGAHSDVLETLSPNVRKRVESLREIQGKHDELEADFLKEREALEAKYQKLYQPLYTKRYEIVNGVTEVEGAANEATDESEENKEKGVPSFWLNAMKNNDVLAEEISERDEGALKFLKDIKWSRIENPKGFKLDFFFDTNPYFSNTVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKVLKKKPKKGSKNAKPITKTESCESFFNFFKPPEVPEDDADIDEDLAEELQNQMEQDYDIGSTLRDKIIPHAVSWFTGEAAQGDEFEDLEDDEDEEEDEDEDEDEEDDEDEDDEEEDDTKTKKKKSGKAQAGDGDGERPPECKQQ* | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso15g1408 | 358 | MobiDBLite | consensus disorder prediction | 290 | 358 | - | - | |
| Gso15g1408 | 358 | Coils | Coil | 299 | 319 | - | - | |
| Gso15g1408 | 358 | PANTHER | NUCLEOSOME ASSEMBLY PROTEIN 1,2 | 3 | 358 | - | - | |
| Gso15g1408 | 358 | MobiDBLite | consensus disorder prediction | 330 | 358 | - | - | |
| Gso15g1408 | 358 | Pfam | Nucleosome assembly protein (NAP) | 51 | 292 | IPR002164 | GO:0005634|GO:0006334 | |
| Gso15g1408 | 358 | PANTHER | TESTIS-SPECIFIC Y-ENCODED PROTEIN | 3 | 358 | IPR002164 | GO:0005634|GO:0006334 | |
| Gso15g1408 | 358 | Gene3D | Nucleosome assembly protein | 116 | 292 | - | - | |
| Gso15g1408 | 358 | MobiDBLite | consensus disorder prediction | 296 | 329 | - | - | |
| Gso15g1408 | 358 | Gene3D | - | 43 | 102 | - | - | |
| Gso15g1408 | 358 | SUPERFAMILY | NAP-like | 28 | 291 | IPR037231 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso15g1408 | Gso-Chr15 | 15542186 | 15545676 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso15g1408 | K11279 | - | gmx:547812 | 573.933 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gso15g1408 | 15 | 15542186 | 15545676 | Gso9g0543 | 9 | 6143508 | 6147109 | GST | |
| Gso13g0762 | 13 | 21951338 | 21954583 | Gso15g1408 | 15 | 15542186 | 15545676 | PCT | |
| Gso17g0452 | 17 | 4095059 | 4098331 | Gso15g1408 | 15 | 15542186 | 15545676 | PCT | |
| Gso15g1408 | 15 | 15542186 | 15545676 | Gso13g0762 | 13 | 21951338 | 21954583 | PCT | |
| Gso15g1408 | 15 | 15542186 | 15545676 | Gso17g0452 | 17 | 4095059 | 4098331 | PCT |