Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0349 ATGGGATGTAGTATAGAATCAAAGCTGGAGCACACATCCCCTGGACCTGGACGCACCATTTTCTCTTCCTCTTTTGTCTCTCTATCAATTATCATATCTACGTTACAAAATCCTTTCACATATACCATACCATACTATAAATACAATTCAACTCTGTTCGCTTTCTCGCTTTTCTCTTCTCTTCTATCTCTGCTTCTTCGCAATCTCAGAACAGAACACAACAGAGCCCTTCAACTCTCTCTGTCGTTGATGGCGTCACAAGCGAGCCTCCTTCTTCAGAAGCAGCTCAAAGATCTTTGCAAAAACCCCGTCGATGGCTTTTCTGCCGGTTTGGTCGACGAAACCAACATTTTTGAATGGAGTGTAACTATAATTGGACCTCCCGATACTCTTTATGAGGGGGGATTTTTCAATGCCATTATGAGCTTTCCACCCAACTACCCAAATAGTCCGCCATCAGTGAAATTTACCTCAGAGTTATGGCATCCCAATGTGTACCCCGATGGGCGAGTTTGCATATCAATTCTTCATCCACCCGGTGATGACCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACGCCTGTTCATACAGTAGAGAGTATAGTATTAAGTATCATATCGATGCTTTCTAGTCCTAATGATGAATCTCCAGCAAATGTTGAAGCTGCGAAGGAGTGGAGGGATAGGAGAGATGAATTCAAGAAGAAGGTTAGCCGATGTGTGCGGAAGTCACAAGAAATGTTGTGA 750 0.436 MGCSIESKLEHTSPGPGRTIFSSSFVSLSIIISTLQNPFTYTIPYYKYNSTLFAFSLFSSLLSLLLRNLRTEHNRALQLSLSLMASQASLLLQKQLKDLCKNPVDGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPPNYPNSPPSVKFTSELWHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEWRDRRDEFKKKVSRCVRKSQEML* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0349 249 CDD UBCc 100 242 IPR000608 -
Gso15g0349 249 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 161 176 IPR023313 -
Gso15g0349 249 SMART ubc_7 90 247 - -
Gso15g0349 249 Gene3D Ubiquitin Conjugating Enzyme 84 249 IPR016135 -
Gso15g0349 249 Pfam Ubiquitin-conjugating enzyme 92 241 IPR000608 -
Gso15g0349 249 SUPERFAMILY UBC-like 86 245 IPR016135 -
Gso15g0349 249 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 13 85 249 - -
Gso15g0349 249 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 85 249 - -
Gso15g0349 249 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 87 247 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0349 Gso-Chr15 3154535 3159248 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0349 94 214 Miscellaneous Gene Families AT3G17000 33.077 9.15e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0349 K10575 - gmx:100782328 429.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0349 15 3154535 3159248 Gso11g3460 11 50502940 50507630 GST
Gso15g0349 15 3154535 3159248 Gso12g0532 12 4778838 4784348 PCT
Gso15g0349 15 3154535 3159248 Gso11g1195 11 10782129 10788311 PCT
Gso12g0532 12 4778838 4784348 Gso15g0349 15 3154535 3159248 PCT
Gso11g1195 11 10782129 10788311 Gso15g0349 15 3154535 3159248 PCT