Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1195 ATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAACCAACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTACGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATGTATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGGATCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACACCTGTTCATACGGTAGAGAGTATAGTATTGAGTATCATATCAATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAAAGGAGTGGAGAGATAGGAGGGATGATTTCAAGAAAAAGGTTAGCCGATGCGTAAGGAAGTCACAAGAAATGTTGTGA 501 0.4511 MASQASLLLQKQLKDLCKNPVDGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPSVKFTSEIWHPNVYPDGRVCISILHPPGEDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRKSQEML* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1195 166 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Gso11g1195 166 Gene3D Ubiquitin Conjugating Enzyme 2 166 IPR016135 -
Gso11g1195 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 166 - -
Gso11g1195 166 Pfam Ubiquitin-conjugating enzyme 9 158 IPR000608 -
Gso11g1195 166 SMART ubc_7 7 164 - -
Gso11g1195 166 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 164 IPR000608 -
Gso11g1195 166 CDD UBCc 17 159 IPR000608 -
Gso11g1195 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 13 2 166 - -
Gso11g1195 166 SUPERFAMILY UBC-like 3 162 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1195 Gso-Chr11 10782129 10788311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1195 11 131 Miscellaneous Gene Families AT3G17000 32.308 9.37e-14 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1195 K10575 - gmx:100305813 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1195 11 10782129 10788311 Gso11g1195 11 10782129 10788311 ECH
Gso12g0532 12 4778838 4784348 Gso11g1195 11 10782129 10788311 GST
Gso15g0349 15 3154535 3159248 Gso11g1195 11 10782129 10788311 PCT
Gso11g3460 11 50502940 50507630 Gso11g1195 11 10782129 10788311 PCT
Gso11g1195 11 10782129 10788311 Gso15g0349 15 3154535 3159248 PCT
Gso11g1195 11 10782129 10788311 Gso11g3460 11 50502940 50507630 PCT