Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0532 ATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAGATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAACCAACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTACGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATGTATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGGATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGTGTAAGGAAGTCACAAGAAATGTTGTGA 504 0.4484 MAASQASLLLQKQLKDLCKNPVDGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPSVKFTSEIWHPNVYPDGRVCISILHPPGEDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRKSQEML* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0532 167 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 79 94 IPR023313 -
Gso12g0532 167 Pfam Ubiquitin-conjugating enzyme 10 159 IPR000608 -
Gso12g0532 167 CDD UBCc 18 160 IPR000608 -
Gso12g0532 167 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 13 3 167 - -
Gso12g0532 167 SMART ubc_7 8 165 - -
Gso12g0532 167 SUPERFAMILY UBC-like 4 163 IPR016135 -
Gso12g0532 167 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 165 IPR000608 -
Gso12g0532 167 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 167 - -
Gso12g0532 167 Gene3D Ubiquitin Conjugating Enzyme 2 167 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0532 Gso-Chr12 4778838 4784348 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0532 12 132 Miscellaneous Gene Families AT3G17000 32.308 8.62e-14 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0532 K10575 - gmx:100499900 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0532 12 4778838 4784348 Gso11g1195 11 10782129 10788311 GST
Gso15g0349 15 3154535 3159248 Gso12g0532 12 4778838 4784348 PCT
Gso11g3460 11 50502940 50507630 Gso12g0532 12 4778838 4784348 PCT
Gso12g0532 12 4778838 4784348 Gso15g0349 15 3154535 3159248 PCT
Gso12g0532 12 4778838 4784348 Gso11g3460 11 50502940 50507630 PCT