Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0175 ATGAAACAAATAGAAATGGAAAGTAACGCATCAGCACTAGCAAAGAAAGTTTGGAGCATGGTACGTGTGGTGTTGTTCATGCTTCGAAAAGGCATAACAAAGGGGAAGCTCATGATGGACCTCAACATGATGCTGAAACGCCGCGGCAAGCTCGCCGGCAAAGCCATTGCCAACTTAATGTCGTCCCACCACCACCACAACCGCGGTGGGTCCCACAACTCTCACCACCTTAAGTTCTCTGCCCCAAGGGAGTACGAGTTCAGCTGCAGCAACACGCCCCACAACTTCTTCTTCCCCACAGCAGGGAAGCACCACCGCCACCACTTCTTCGCCTGTGTCCACGCGCCTCCGACGCAGGACGACGACGTTGTGACGGTGAACGCAATGAAGGCAGTGATGGAGATGCTCAACAACAACAACAACAACGACGCCGTTAAGGTTGAAGCGTCCCCTGCGCTGCCAGGGTTTGGACGGAGCCCTATGGTGAGGCAGCTTAGGGTTACGGACTCGCCGTTCCCTCTGCGAGACGCCGATCAAGACAACGACCACCTGGTCGATAAGGCCGCCGAAGATTTCATAAAGAGGTTTTACAAGGAGTTGAGGAAGCAGGATTAA 615 0.5382 MKQIEMESNASALAKKVWSMVRVVLFMLRKGITKGKLMMDLNMMLKRRGKLAGKAIANLMSSHHHHNRGGSHNSHHLKFSAPREYEFSCSNTPHNFFFPTAGKHHRHHFFACVHAPPTQDDDVVTVNAMKAVMEMLNNNNNNDAVKVEASPALPGFGRSPMVRQLRVTDSPFPLRDADQDNDHLVDKAAEDFIKRFYKELRKQD* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0175 204 Pfam Cotton fibre expressed protein 185 203 IPR008480 -
Gso15g0175 204 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 6 203 - -
Gso15g0175 204 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN 6 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0175 Gso-Chr15 1462344 1463235 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0175 - - gsj:114386903 400.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0175 15 1462344 1463235 Gso11g3636 11 52077785 52078655 GST
Gso15g0175 15 1462344 1463235 Gso7g0138 7 1329529 1330453 PCT
Gso15g0175 15 1462344 1463235 Gso8g1676 8 16429368 16430307 PCT
Gso7g0138 7 1329529 1330453 Gso15g0175 15 1462344 1463235 PCT
Gso8g1676 8 16429368 16430307 Gso15g0175 15 1462344 1463235 PCT