Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0473 ATGGAAGCTCTCAAGACCCTCTTCTTAGCCATTTTTGTTGTCTTGGCTTCAGCATTGTATTCAGCCAATGCCAAAATCCAGGAGCATGAGTTTGTTATTCAAGCAACGCCAGTGAAGAGGCTGTGCAACACCCACAGCACCATCACAGTGAATGGACAATTCCCTGGTCCAACATTGGAAGTCAACAATGGTGACACTTTGGTCGTCAAAGTCACTAACAAAGCTCGTTACAATGTGACTATTCACTGGCATGGAATTCGGCAAATGAGAACAGGATGGGCTGATGGACCAGAATTTGTGACTCAGTGCCCTATTCGTCCTGGAGAAAGTTACACCTATCGTTTTACCATTCAAGGACAAGAAGGAACACTTTGGTGGCATGCTCATAGCTCATGGCTAAGAGCCACTGTTTATGGTGCTTTAATCATTCACCCCAGGGAGGGAGAGGCGTATCCTTTCACTAAGCCAAAGCGCGAGACTCCAATTCTTCTTGGGGAGTGGTGGGACGCAAACCCGATCGATGTTGTGAGACAAGCTACACAAACAGGAGCAGCACCTAATATTTCTGATGCATACACCATCAATGGTCAACCTGGCGATCTTTACAAGTGTTCTAGCCAAGGCACCACCATTGTTCCAATAGATTCTGGCGAGACAAACCTCCTAAGAGTGATCAATGCAGCACTGAACCAACCCTTGTTCTTCACAGTGGCCAACCACAAGCTCACAGTGGTTGGTGCCGATGCCTCCTACCTTAAACCCTTCACCACCAACGTCATCATGCTGGGACCAGGCCAAACCACCGATGTCCTCATCCAAGGTGACCAACCTCCCACACGCTACTACATGGCCGCACGTGCCTACCAATCCGCCCAAAACGCACCGTTTGACAACACCACCACCACCGCCATTCTCGAATATAAATCCGCACCGTGCCCCGCCAAGGGTTCTTCGATCAAACCCGTTATGCCGTCTCTCCCAGCCTACAACGACACCAACACAGTCACTGCATTCAGCAAAAGCTTCAGAAGCCCCAGAAAAGTTGAAGTCCCCGCAGAAATTGATGACAATCTTTTCTTCACCATTGGCCTTGGACTCAACAATTGCCCGAAAAATTTCAATGCGAACCAATGCCAGGGACCGAATGGAACGCGTTTCACTGCCAGCATGAACAATGTCTCGTTTGTTCTCCCAAACAACGTTTCAATCTTGCAGGCTCATCACCTTGGTGTGCAAGGAGTGTTCACCACTGATTTTCCTACGCAACCTCCTGTCAAGTTTGATTACACTGGTAATGTGAGTCGTTCTCTGTGGCAACCTGTTCAAGGGACCAAAGTGACCAAGTTGAAGTTTGGATCGAGGGTGCAGATTGTGTTGCAGGATACTAGCATTGTGACCCCTGAGAACCACCCCATTCACCTTCATGGGTATGATTTCTACATCGTGGCTGAGGGGTTTGGGAATTTTGATCCGAACAAAGATACTTCCAAGTTCAACCTTGTTGATCCACCTATGAGGAACACTGTGGCTGTGCCAGTGAATGGATGGGCAGTTATCAGATTTGTTGCTGACAACCCAGGAGCTTGGATCATGCATTGTCACTTGGATGTTCACATCGGATGGGGTTTGGCCACTGTGCTTTTGGTGGATAATGGAGTAGGCCTGTTGCAATCCATAGAGCCCCCTCCTGAGGATCTGCCTCTATGTTAG 1710 0.4854 MEALKTLFLAIFVVLASALYSANAKIQEHEFVIQATPVKRLCNTHSTITVNGQFPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGIRQMRTGWADGPEFVTQCPIRPGESYTYRFTIQGQEGTLWWHAHSSWLRATVYGALIIHPREGEAYPFTKPKRETPILLGEWWDANPIDVVRQATQTGAAPNISDAYTINGQPGDLYKCSSQGTTIVPIDSGETNLLRVINAALNQPLFFTVANHKLTVVGADASYLKPFTTNVIMLGPGQTTDVLIQGDQPPTRYYMAARAYQSAQNAPFDNTTTTAILEYKSAPCPAKGSSIKPVMPSLPAYNDTNTVTAFSKSFRSPRKVEVPAEIDDNLFFTIGLGLNNCPKNFNANQCQGPNGTRFTASMNNVSFVLPNNVSILQAHHLGVQGVFTTDFPTQPPVKFDYTGNVSRSLWQPVQGTKVTKLKFGSRVQIVLQDTSIVTPENHPIHLHGYDFYIVAEGFGNFDPNKDTSKFNLVDPPMRNTVAVPVNGWAVIRFVADNPGAWIMHCHLDVHIGWGLATVLLVDNGVGLLQSIEPPPEDLPLC* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0473 569 CDD CuRO_2_LCC_plant 161 307 IPR034285 -
Gso14g0473 569 TIGRFAM laccase: laccase 24 569 IPR017761 GO:0046274|GO:0048046|GO:0052716
Gso14g0473 569 Gene3D - 15 145 IPR008972 -
Gso14g0473 569 ProSitePatterns Multicopper oxidases signature 2. 532 543 IPR002355 GO:0005507
Gso14g0473 569 SUPERFAMILY Cupredoxins 351 569 IPR008972 -
Gso14g0473 569 Gene3D - 367 569 IPR008972 -
Gso14g0473 569 PANTHER LACCASE 5 569 - -
Gso14g0473 569 Gene3D - 155 347 IPR008972 -
Gso14g0473 569 SUPERFAMILY Cupredoxins 153 345 IPR008972 -
Gso14g0473 569 PANTHER MULTI-COPPER OXIDASE 5 569 IPR045087 -
Gso14g0473 569 ProSitePatterns Multicopper oxidases signature 1. 527 547 IPR033138 -
Gso14g0473 569 Pfam Multicopper oxidase 159 309 IPR001117 -
Gso14g0473 569 CDD CuRO_1_LCC_plant 29 145 IPR034288 GO:0005507
Gso14g0473 569 SUPERFAMILY Cupredoxins 23 172 IPR008972 -
Gso14g0473 569 Pfam Multicopper oxidase 33 147 IPR011707 GO:0005507
Gso14g0473 569 CDD CuRO_3_LCC_plant 414 552 IPR034289 GO:0005507
Gso14g0473 569 Pfam Multicopper oxidase 419 551 IPR011706 GO:0005507|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0473 Gso-Chr14 4477954 4482019 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0473 K05909 - gmx:100796956 1176.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0206 18 1772205 1777149 Gso14g0473 14 4477954 4482019 PCT
Gso13g1412 13 29636973 29641667 Gso14g0473 14 4477954 4482019 PCT
Gso14g0473 14 4477954 4482019 Gso18g0206 18 1772205 1777149 PCT
Gso14g0473 14 4477954 4482019 Gso13g1412 13 29636973 29641667 PCT