Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1412 ATGGAGTCTGTCAAGTTCATTAACATGAATGCCAAACACTCCTCCATCTTTTTATTAGCCCTGATCTTTGTTCTGATCTTAGCTTCAGCAAATGCCAAAATTCACGAGCACGAGTTTGTTGTTGAAGCAACTCCAGTGAAGAGGCTGTGCAAAACCCACAACAGCATCACCGTGAATGGGCAATACCCGGGCCCAACGTTGGAAATCAACAATGGAGACACTTTGGTTGTCAAAGTCACTAACAAAGCTCGTTACAATGTGACCATTCATTGGCACGGTGTTAGGCAAATGAGAACAGGATGGGCAGATGGACCAGAATTTGTGACTCAGTGCCCGATTCGTCCTGGAGGAAGTTACACCTACCGTTTTACCGTTCAAGGACAAGAAGGCACACTTTGGTGGCACGCTCATAGCTCATGGTTAAGGGCCACTGTTTACGGTGCTTTAATCATTCGTCCTAGGGAAGGAGAACCCTACCCTTTCCCCAAGCCTAAGCACGAAACACCCATTCTTCTTGGGGAATGGTGGGACGCAAACCCTATTGATGTTGTGAGGCAGGCCACGCGAACTGGGGGAGCTCCAAACGTGTCTGATGCATACACTATCAATGGTCAACCTGGTGATCTTTACAAGTGCTCTAGCAAAGACACTACCATTGTTCCAATCCATTCCGGCGAGACTAACCTTCTACGTGTTATCAATGCTGCACTCAATCAACCTCTCTTCTTCACCGTCGCAAACCACAAACTCACCGTGGTTGGCGCCGACGCCTCCTACCTCAAACCCTTCACCACCAAAGTCCTCATGCTAGGACCCGGTCAAACCACCGATGTATTGATCACCGGCGACCAGCCACCTTCCCCCTACTACATGGCGGCGCGTGCGTACCAATCTGCCCAAAACGCCGCGTTCGACAACACCACCACCACCGCCATACTCGAATACAAGTCACCTCATCACAGTAATCATTCTCACCATCATTCCAAAGGAGCACTGAAGAAAAAAACCAAACCGATCATGCCCTCACTCCCTGCCTACAACGATACAAACACAGTCACTGCCTTCAGCAAAAGCTTTAGAAGCCCTAGAAAAGTTGAAGTCCCCGATGAAATCGACCAGAGCCTCTTTTTCACTGTGGGCTTAGGAATCAACAAGTGCCCCAAAAACTTTGGACCAAAGAGGTGTCAGGGACCCATTAATGGGACGAGGTTCACTGCGAGCATGAACAACGTGTCTTTCGTTCTCCCGAACAACGTGTCCATCTTGCAGGCTCACCACCTCGGAATCCCCGGAGTGTTCACCACTGATTTTCCGGGGAAGCCGCCGGTGAAGTTTGATTACACCGGCAACGTGAGTCGTTCGCTGTGGCAACCTGTTCCCGGGACAAAGGCACACAAGTTGAAGTTTGGGTCCAGGGTGCAGATTGTGTTGCAGGACACTAGCATTGTTACTCCTGAGAACCACCCTATCCATCTTCATGGCTACGATTTCTACATCGTTGCTGAGGGGTTCGGAAACTTCGACGCCAAGAAAGATACGGCCAAATTCAACCTTGTTGATCCACCTTTGAGGAACACTGTGGCCGTGCCTGTAAATGGATGGGCTGTTATTCGATTTGTCGCTGATAACCCTGGTGCCTGGCTTTTGCATTGTCACTTGGACGTTCACATCGGATGGGGTTTGGCTACGGTGTTGTTGGTGGAGAACGGAGTTGGGAAGTTGCAATCCATAGAGCCTCCTCCGCTGGATCTTCCTCTTTGTTAG 1764 0.4983 MESVKFINMNAKHSSIFLLALIFVLILASANAKIHEHEFVVEATPVKRLCKTHNSITVNGQYPGPTLEINNGDTLVVKVTNKARYNVTIHWHGVRQMRTGWADGPEFVTQCPIRPGGSYTYRFTVQGQEGTLWWHAHSSWLRATVYGALIIRPREGEPYPFPKPKHETPILLGEWWDANPIDVVRQATRTGGAPNVSDAYTINGQPGDLYKCSSKDTTIVPIHSGETNLLRVINAALNQPLFFTVANHKLTVVGADASYLKPFTTKVLMLGPGQTTDVLITGDQPPSPYYMAARAYQSAQNAAFDNTTTTAILEYKSPHHSNHSHHHSKGALKKKTKPIMPSLPAYNDTNTVTAFSKSFRSPRKVEVPDEIDQSLFFTVGLGINKCPKNFGPKRCQGPINGTRFTASMNNVSFVLPNNVSILQAHHLGIPGVFTTDFPGKPPVKFDYTGNVSRSLWQPVPGTKAHKLKFGSRVQIVLQDTSIVTPENHPIHLHGYDFYIVAEGFGNFDAKKDTAKFNLVDPPLRNTVAVPVNGWAVIRFVADNPGAWLLHCHLDVHIGWGLATVLLVENGVGKLQSIEPPPLDLPLC* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1412 587 CDD CuRO_2_LCC_plant 169 315 IPR034285 -
Gso13g1412 587 SUPERFAMILY Cupredoxins 29 180 IPR008972 -
Gso13g1412 587 ProSitePatterns Multicopper oxidases signature 1. 545 565 IPR033138 -
Gso13g1412 587 Pfam Multicopper oxidase 167 316 IPR001117 -
Gso13g1412 587 Gene3D - 165 364 IPR008972 -
Gso13g1412 587 SUPERFAMILY Cupredoxins 161 362 IPR008972 -
Gso13g1412 587 Pfam Multicopper oxidase 437 569 IPR011706 GO:0005507|GO:0016491
Gso13g1412 587 CDD CuRO_3_LCC_plant 432 570 IPR034289 GO:0005507
Gso13g1412 587 Pfam Multicopper oxidase 41 155 IPR011707 GO:0005507
Gso13g1412 587 PANTHER MULTI-COPPER OXIDASE 11 587 IPR045087 -
Gso13g1412 587 ProSitePatterns Multicopper oxidases signature 2. 550 561 IPR002355 GO:0005507
Gso13g1412 587 CDD CuRO_1_LCC_plant 37 153 IPR034288 GO:0005507
Gso13g1412 587 Gene3D - 394 587 IPR008972 -
Gso13g1412 587 Gene3D - 35 164 IPR008972 -
Gso13g1412 587 TIGRFAM laccase: laccase 32 587 IPR017761 GO:0046274|GO:0048046|GO:0052716
Gso13g1412 587 SUPERFAMILY Cupredoxins 367 587 IPR008972 -
Gso13g1412 587 PANTHER LACCASE 11 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1412 Gso-Chr13 29636973 29641667 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1412 K05909 - gmx:100808948 1203.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0206 18 1772205 1777149 Gso13g1412 13 29636973 29641667 GST
Gso13g1412 13 29636973 29641667 Gso14g0473 14 4477954 4482019 PCT
Gso14g0473 14 4477954 4482019 Gso13g1412 13 29636973 29641667 PCT