Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1378 ATGTCTAGCAAACAGACTTATAGCTTCTGCTTCTGCTTCCGCCGGCGTTTCAGGATCCCCGTGTCGGAGGCCCCGCCGGAGATAAGGACCCTTTTCGACGGTTACTCCGATGAGAATGGCGTCATGACAGCCACTCACCTCCGAAGTTTTCTGGCTGAGGTGCAGAGGGAGGACAATGCCACTGAGGAGGAAGCACAAGCCATCATCGATGGTCACAAGCATCTCAGTATCTTCCACCGAAGTGGTCTCAATCTCGAGAGTTTCTTCAACTATCTTTTTAGTCACCATAATAACCCACCTCTCTTACCTTCTCTTGGGGTGCACCAAGATATGTCTTCACCGTTGTCTCATTACTTCATTTATACCGGTCATAATTCCTATCTAACTGGGAACCAGCTTAGCAGTGACTGCAGTGACGTCCCCATCATCAATGCACTGGAGAAGGGTGTAAGGGTGATTGAATTAGATATATGGCCTAATGAATCAAAGGATAATGTAGATGTTCTTCATGGAAGGACTTTGACTTCTCCTGTGGCACTCATCAAATGTCTGAGGTCTATTAAGCAGCATGCCTTTGTTGCCTCAGAATATCCAGTTGTAATAACCTTAGAAGACCATCTAACTCCCGACCTTCAGGCCAAAGTGGCTGAGATGATTACTCAAACATTTGGAGACATACTATTTGCTCCTACCTCAGAAAGCTTGAAGGAATTTCCTTCTCCTGAATCACTTAAAGGGAGGATTATTATATCAACCAAACCACCTAAGGAGTACCTTGAGGCAAAAGAAGTACAGGAAAAGGAGGAGGAATCACAACAGGAAAAGCCTGCAGATGATGAAGAAGCATGGGGGAAGGAAGTCCCTAGTTTGAGAGGTGGCACTATCTCTGATTACAAGAACATTGAGGATGATGATGTTCTTGATGATGAGGAAGATATTGATGAAGCAGAAAAGTCACGTCAGGATGCAGCGGACGAATACAGACGTTTAATTGCCATTCATGCTGGGAAGCCTAAAGGCGGATTAACGGAATGTCTCAAAGTGGATCCTGATAAAGTGAGACGTCTAAGTTTAAGTGAGCTACAGCTTGAAAAGGCTGCTGAAACTCATGGAAAAGAAATTGTCAGGTTCACTCAGCGGAATATACTGAGAGTGTATCCAAAAGGTACTCGCATTACTTCGACAAATTATAACCCATTGATTGGGTGGATGCATGGAGCTCAGATGGTTGCATTTAACATGCAGGGGTATGGTAGATCTCTTTGGTTGATGCAGGGAATGTTCAAAGCCAATGGCGGATGCGGTTATGTTAAAAAACCAGATCTTCTATTAAAGGTTGGTCCAAATAATGAGGTCTTTGATCCTAGATCTCATTTGCCTGTGAAGACAACCCTGAAGGTGACTATATATATGGGGGAAGGATGGTTTCTTGATTTCAAACATACACACTTTGATAAATTCTCACCTCCGGACTTCTACGCAAGAGTGGGGATTGCTGGAGTCCCTAATGATACTGTTATGAAGAAAACCGAGAAAGTAGAGGATAATTGGTCACCTTCATGGAATCAAGTATTCAAGTTCCCACTTGCTGTTCCGGAACTTGCTCTGCTCCGCGTAGAAGTTCACGAGTATGACATGTCTGAGAAGGATGATTTTGGTGGCCAAACGTGCTTACCTGTGTGGGAACTAAGAAGTGGAATCCGAGCAGTTCCACTGTATTCCCGCAAAGGAGATAAGTATGCCAATGTGAAGCTTCTCATGCACTTTGAATTCATTTGA 1779 0.4413 MSSKQTYSFCFCFRRRFRIPVSEAPPEIRTLFDGYSDENGVMTATHLRSFLAEVQREDNATEEEAQAIIDGHKHLSIFHRSGLNLESFFNYLFSHHNNPPLLPSLGVHQDMSSPLSHYFIYTGHNSYLTGNQLSSDCSDVPIINALEKGVRVIELDIWPNESKDNVDVLHGRTLTSPVALIKCLRSIKQHAFVASEYPVVITLEDHLTPDLQAKVAEMITQTFGDILFAPTSESLKEFPSPESLKGRIIISTKPPKEYLEAKEVQEKEEESQQEKPADDEEAWGKEVPSLRGGTISDYKNIEDDDVLDDEEDIDEAEKSRQDAADEYRRLIAIHAGKPKGGLTECLKVDPDKVRRLSLSELQLEKAAETHGKEIVRFTQRNILRVYPKGTRITSTNYNPLIGWMHGAQMVAFNMQGYGRSLWLMQGMFKANGGCGYVKKPDLLLKVGPNNEVFDPRSHLPVKTTLKVTIYMGEGWFLDFKHTHFDKFSPPDFYARVGIAGVPNDTVMKKTEKVEDNWSPSWNQVFKFPLAVPELALLRVEVHEYDMSEKDDFGGQTCLPVWELRSGIRAVPLYSRKGDKYANVKLLMHFEFI* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1378 592 Pfam Phosphoinositide-specific phospholipase C, efhand-like 27 96 IPR015359 -
Gso13g1378 592 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 1 592 - -
Gso13g1378 592 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 356 441 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Gso13g1378 592 SMART C2_3c 464 572 IPR000008 -
Gso13g1378 592 Pfam Phosphatidylinositol-specific phospholipase C, X domain 111 253 IPR000909 -
Gso13g1378 592 SMART plcy_3 327 444 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Gso13g1378 592 CDD PI-PLCc_plant 108 431 - -
Gso13g1378 592 Gene3D C2 domain 459 592 IPR035892 -
Gso13g1378 592 Gene3D Phosphatidylinositol (PI) phosphodiesterase 106 457 IPR017946 GO:0006629|GO:0008081
Gso13g1378 592 ProSiteProfiles C2 domain profile. 445 574 IPR000008 -
Gso13g1378 592 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 1 592 IPR001192 GO:0035556
Gso13g1378 592 SUPERFAMILY PLC-like phosphodiesterases 109 444 IPR017946 GO:0006629|GO:0008081
Gso13g1378 592 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 464 591 IPR035892 -
Gso13g1378 592 MobiDBLite consensus disorder prediction 262 286 - -
Gso13g1378 592 MobiDBLite consensus disorder prediction 302 316 - -
Gso13g1378 592 Coils Coil 306 333 - -
Gso13g1378 592 PRINTS Phospholipase C signature 114 132 IPR001192 GO:0035556
Gso13g1378 592 PRINTS Phospholipase C signature 140 160 IPR001192 GO:0035556
Gso13g1378 592 PRINTS Phospholipase C signature 237 254 IPR001192 GO:0035556
Gso13g1378 592 PRINTS Phospholipase C signature 382 403 IPR001192 GO:0035556
Gso13g1378 592 PRINTS Phospholipase C signature 403 421 IPR001192 GO:0035556
Gso13g1378 592 PRINTS Phospholipase C signature 558 568 IPR001192 GO:0035556
Gso13g1378 592 SUPERFAMILY EF-hand 24 111 IPR011992 -
Gso13g1378 592 Gene3D - 23 99 - -
Gso13g1378 592 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 109 253 - -
Gso13g1378 592 SMART plcx_3 109 253 IPR000909 -
Gso13g1378 592 Pfam C2 domain 465 566 IPR000008 -
Gso13g1378 592 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 357 443 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Gso13g1378 592 CDD C2_PLC_like 462 591 - -
Gso13g1378 592 MobiDBLite consensus disorder prediction 262 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1378 Gso-Chr13 29292943 29297889 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1378 3 592 Acyl Lipid Metabolism Gene Families AT3G55940 68.235 0.0 815
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1378 K05857 - gmx:100784534 1116.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0241 18 2096393 2101105 Gso13g1378 13 29292943 29297889 GST
Gso13g1378 13 29292943 29297889 Gso14g0502 14 4813256 4818171 PCT
Gso13g1378 13 29292943 29297889 Gso2g2187 2 46544940 46550017 PCT
Gso14g0502 14 4813256 4818171 Gso13g1378 13 29292943 29297889 PCT
Gso2g2187 2 46544940 46550017 Gso13g1378 13 29292943 29297889 PCT