Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1270 ATGGATACTCCTCAATTCAATGCTTCTTCCTCTAACATTTCCCCTTCACCTTCACCGCAACAATCATCACCTCCTATTCCAGCTGCTTATCAGCCCCAACCCCAACCTTTATCATCCTCTTCTGCTTCTCTTCCTCCTGGTTTGCCTGATGTGCCATACAAGACTCGCTTGCAATCTTTCACTCAAAAGTGTAACATATCACTTCCTATGTACATAAATGTTAACGAGGGGCGCCAACATGATCCAAAATTTAGGTCAACAGTATGGGTTGATGGAATGAAATACACTTCCCCCAATACTTTCTCTCACCTAAGAGCGGCCGAGGCGGATGTGGCTAGAATGGCTCTAGAGAACCTACATGTAAAATTTAAAACAGAAGAACGCCCTGTTACTCATGAGAACACTACTTTGTCAAAATCTATCTTACATGAATATGCTGCCAAGCTGAAGGTGGAAAAGCCTGCATACAACACTGTTCAGCTAGAAGGGATGCTTCCTCTTTTCGTATCATCTATGACCTTTCAGGGTACAACATACGTTGGTGATGCAGCTAGAAGCAAAAAAGAGGCTGAACAGTTAGCAGCACGTAACGCTATTACGTCAATTCTAGCAGATGGTGCTACCTCAGGGCTACTATATGAGACAATAAAGTCGAAATATAGTACTTTTGGTGTAGTCAGATCGACCAAATCGGAATGCATTAATGCTAGTTCAGCAGTCGTCGAACATGTACCATCCCTGATTGCAGTTCCTGTGGCTGCTAATGGGAATGAGACAAAAGTTGCACTTACTGTGCCTTCCTTCAATCAGGAATGTCAGATGCGGGAACATGTATCATCCGTTCAAGCCATCACCATTACTGAAGTTTCAAATCTGAATCTCCTTCCAGGCCCAGAACAGTCTACTGCTGGTGTTTCATGTGAACTGTCCATTGGCATTGGTTCTGGTGCATTGTCAATTGGTGATGGGTCACGTGAACTGTCTGTTGGTGATGGTTCAGGTTCAAAAAAGCGGAAAAGGAACAAGTCAAAGGCTAATAAGAAGTTGGGATTGGAATAG 1059 0.4353 MDTPQFNASSSNISPSPSPQQSSPPIPAAYQPQPQPLSSSSASLPPGLPDVPYKTRLQSFTQKCNISLPMYINVNEGRQHDPKFRSTVWVDGMKYTSPNTFSHLRAAEADVARMALENLHVKFKTEERPVTHENTTLSKSILHEYAAKLKVEKPAYNTVQLEGMLPLFVSSMTFQGTTYVGDAARSKKEAEQLAARNAITSILADGATSGLLYETIKSKYSTFGVVRSTKSECINASSAVVEHVPSLIAVPVAANGNETKVALTVPSFNQECQMREHVSSVQAITITEVSNLNLLPGPEQSTAGVSCELSIGIGSGALSIGDGSRELSVGDGSGSKKRKRNKSKANKKLGLE* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1270 352 SMART DRBM_3 138 203 IPR014720 -
Gso13g1270 352 SMART DRBM_3 53 120 IPR014720 -
Gso13g1270 352 SUPERFAMILY dsRNA-binding domain-like 49 119 - -
Gso13g1270 352 CDD DSRM_SF 143 199 - -
Gso13g1270 352 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 52 121 IPR014720 -
Gso13g1270 352 MobiDBLite consensus disorder prediction 317 352 - -
Gso13g1270 352 MobiDBLite consensus disorder prediction 1 50 - -
Gso13g1270 352 Gene3D - 124 207 - -
Gso13g1270 352 Gene3D - 42 123 - -
Gso13g1270 352 PANTHER RIBONUCLEASE III 36 346 IPR011907 GO:0003723|GO:0004525|GO:0006364
Gso13g1270 352 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 4 36 346 - -
Gso13g1270 352 Pfam Double-stranded RNA binding motif 53 119 IPR014720 -
Gso13g1270 352 Pfam Double-stranded RNA binding motif 138 199 IPR014720 -
Gso13g1270 352 SUPERFAMILY dsRNA-binding domain-like 139 203 - -
Gso13g1270 352 MobiDBLite consensus disorder prediction 1 17 - -
Gso13g1270 352 MobiDBLite consensus disorder prediction 18 32 - -
Gso13g1270 352 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 137 204 IPR014720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1270 Gso-Chr13 27991991 27995795 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1270 - - gsj:114381825 585.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0598 14 5848417 5853266 Gso13g1270 13 27991991 27995795 PCT
Gso2g2099 2 45593902 45599677 Gso13g1270 13 27991991 27995795 PCT