Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1253 ATGGTGGCTGTGGTTTCCCAAGAAAATGTTGCGGCATTGGTTTCTCGTACCGGTAGGGAGTTGCAACGTTATAGAAAAGGTCGTCGCCAAGTTGTGGGATGCATACCGTACAGATTTAAGATTGGGGAGAAGACTTCCTTGGATGTTGTTTCTGATGAATTGGAAGTTCTGGTTATTAGTTCCCAGAAAGGAAAAGGGATGCTATTTCCAAAGGGAGGCTGGGAATTAGACGAATCAAAAAAGGAGGCAGCTTTGAGAGAAACCATGGAGGAAGCTGGGGTGCGAGGCATTGTTGGGGGTAAATTGGGCAAATGGAGTTTCAAGAGCAAGACTCATGACACTTTCTATGAAGGCTACATGTTCCCTTTACTTGTTCAAGAACAATTGGAGTTCTGGCCAGAGCAAAACGTTCGTCAAAGAATATGGATGAGCGTCACAGAAGCAAGGGAAGTTTGTCAACACTGGTGGATGAAGGAAGCTCTAGACAGACTTGTAAATCGTCTCTCTGGTCAAAAACAACTTGGTCATTATCGTGATAATAAGCGAGTTCTTGGATCTATGAACTGCAAAGGAGATGCCAAATCTGCTTCTGTAAATAGTGTAGCATCTTTGGAGGGTAGAGCTCAACTTTTTTGA 636 0.4371 MVAVVSQENVAALVSRTGRELQRYRKGRRQVVGCIPYRFKIGEKTSLDVVSDELEVLVISSQKGKGMLFPKGGWELDESKKEAALRETMEEAGVRGIVGGKLGKWSFKSKTHDTFYEGYMFPLLVQEQLEFWPEQNVRQRIWMSVTEAREVCQHWWMKEALDRLVNRLSGQKQLGHYRDNKRVLGSMNCKGDAKSASVNSVASLEGRAQLF* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1253 211 SUPERFAMILY Nudix 22 168 IPR015797 -
Gso13g1253 211 CDD Nudix_Hydrolase_9 30 158 - -
Gso13g1253 211 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 14 168 - -
Gso13g1253 211 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 6 178 - -
Gso13g1253 211 Pfam NUDIX domain 53 162 IPR000086 -
Gso13g1253 211 PANTHER NUDIX HYDROLASE-LIKE PROTEIN 6 178 - -
Gso13g1253 211 ProSitePatterns Nudix box signature. 72 93 IPR020084 GO:0016787
Gso13g1253 211 ProSiteProfiles Nudix hydrolase domain profile. 27 165 IPR000086 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1253 Gso-Chr13 27722086 27723983 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1253 K07766 - gmx:100500105 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0362 18 3488080 3490217 Gso13g1253 13 27722086 27723983 GST
Gso13g1253 13 27722086 27723983 Gso14g1802 14 50365417 50367596 PCT
Gso13g1253 13 27722086 27723983 Gso2g2080 2 45397629 45399467 PCT
Gso14g1802 14 50365417 50367596 Gso13g1253 13 27722086 27723983 PCT
Gso2g2080 2 45397629 45399467 Gso13g1253 13 27722086 27723983 PCT