Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1073 ATGGATTCTAAGAGCTTCAAATTTTACGCGCTGAGCGGCTCCATTGCTCGGCGCGTGTTCTTCCGCGCGTTATTGCTCTCCTCCGCTGTCTCCCTCGTTGCCCTGATTCGCTTCCTCCCCACCGTCGATTTGGGATCTTTGACTCCCAAGACCTACTTTGACTGCGTCGACGACGACTCAGATTCGCTCTCCGAAAACGCCACCTTAACCGCCGGCTCCTACTTGTTCCAGAGCCGCATCCTCAACACCTTCTGGGGCTCCTTCGACTCCATGAACTGCAAAAACGACACGAGTTTAGCTTCCACCGTCATCACCATTCTAACGGGTAAACGACTCTTGAACTTTGGCGCAAGAAGCCTCTGCGTTGGAGAAGGGTCTAATGTAATTGTCTCCTCAATGCAACGGTTGGGATTCTCCAATGTCGTTGGTCTCCACAAGCACCCTTTTTTGTCCCTCCACAAAAAGAAAACCGTGTGCCACTTCGAGTACGATGATTCCACCTTCGACTTCGTGTTCTCCAAGGATGTTGTTGACCAGGTTTCTGTCCCAGCTGCATTGCTCGTGCTTGAGGTTGAGCGCATTCTTAAGCCTGGTGGAATCGGTGCCTTGCTTGTTGGTTCTTCTTCTTCATCATCAGTGCCTTCATTGCTGAGATCTTCCAACCTGGTGCATGTTGGTTATGTCAATGAACTCAACCTTGTGGTTTTCAAGAAAAGATCTGAAAACGCAAGCACAAGCTCTACTTTTTATAACCATGTACTACCAGAAGATTGTGCAAGTGTTGAATTCACCAAGCCTTTGGTGAAACTAATGGAGCCTCTTGTGGTGGAAAGATTAGGACATGATGTCAAGTATGAGAAAAAAAATGTCTCCTATTTGCCTAAGTTTGTGGACGTTTCTAATAAGAAGAGGCTGGTGTATATTGATATTGGGGTGAGGGAGTTGGTGAATGCAAATGTCAATGTTACTAATTGGTTCCCACCGTCTTATCCCATTGATCAGAAGGCTTTCAGTGTTTACTTTGTTCATTACAACGCTTCTGTGTTGTCCTATGTGAAACTGCCTCGTGTCACGTTCGTTTATCATCCGGGTTTAGCTGGGAAAATTGCACACAAGAATGGTGTGGATGGAGAAATGGAACCGTTTTTCGGTGAGGAAGAGTTTGATTTTCTTGTGTGGTTCAAGGAAACTGTGCAGCATGCTGATTTTGTGGTTCTGAAGATGCATGCTGGGGAAGTTGAAATGAAGTTCCTTGCGGATATATTTGAGAGTGGAGCTATATGCTCTGTTGATGAGTTGTTTCTTAGTTGCTCAGAGAGTGGAGATGGTAAAAGGGAAACCATGAGCAGCAGGGAACACTGCATGGATACTTACAAGGGTCTCAGAAGCAATGGTGTCTACGTTCATCAATGGTGGGATGCAAAATTGCATCAAGGGGCTTAA 1443 0.4615 MDSKSFKFYALSGSIARRVFFRALLLSSAVSLVALIRFLPTVDLGSLTPKTYFDCVDDDSDSLSENATLTAGSYLFQSRILNTFWGSFDSMNCKNDTSLASTVITILTGKRLLNFGARSLCVGEGSNVIVSSMQRLGFSNVVGLHKHPFLSLHKKKTVCHFEYDDSTFDFVFSKDVVDQVSVPAALLVLEVERILKPGGIGALLVGSSSSSSVPSLLRSSNLVHVGYVNELNLVVFKKRSENASTSSTFYNHVLPEDCASVEFTKPLVKLMEPLVVERLGHDVKYEKKNVSYLPKFVDVSNKKRLVYIDIGVRELVNANVNVTNWFPPSYPIDQKAFSVYFVHYNASVLSYVKLPRVTFVYHPGLAGKIAHKNGVDGEMEPFFGEEEFDFLVWFKETVQHADFVVLKMHAGEVEMKFLADIFESGAICSVDELFLSCSESGDGKRETMSSREHCMDTYKGLRSNGVYVHQWWDAKLHQGA* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1073 480 PANTHER PEPTIDE UPSTREAM PROTEIN 1 473 - -
Gso13g1073 480 Gene3D Vaccinia Virus protein VP39 99 251 IPR029063 -
Gso13g1073 480 Pfam Methyltransferase domain 155 200 IPR013216 GO:0008168
Gso13g1073 480 PANTHER PEPTIDE UPSTREAM PROTEIN 1 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1073 Gso-Chr13 25197995 25199728 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1073 - - gmx:100788504 933.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1506 19 43893202 43895229 Gso13g1073 13 25197995 25199728 PCT
Gso3g1520 3 41081510 41083575 Gso13g1073 13 25197995 25199728 PCT
Gso13g1073 13 25197995 25199728 Gso19g1506 19 43893202 43895229 PCT
Gso13g1073 13 25197995 25199728 Gso3g1520 3 41081510 41083575 PCT