Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0839 ATGGCCACCGATCGTTTGACCCGGGTTCACAGTCTCCGTGAGAGGCTTGATGAAACCCTCACTGCCAACAGGAATGAAATTTTGGCCCTTCTGTCAAGGATCGAAGCCAAGGGCAAGGGCATCCTGCAACACCACCAGGTCATTGCTGAGTTTGAGGAAATCCCTGAGGAGAACAGACAGAAGCTCACTGATGGTGCCTTTGGAGAAGTCTTGAGATCTACACAGGAAGCCATAGTTTTGCCACCATGGGTTGCTCTGGCTGTTCGTCCAAGACCTGGTGTGTGGGAGTACCTGAGAGTGAATGTGCACGCTCTTGTTGTTGAGGAGTTGCAACCTGCTGAGTACCTGCACTTCAAGGAAGAACTTGTTGACGGAAGTTCTAATGGCAACTTTGTGCTTGAGTTGGACTTTGAACCATTCAATGCAGCCTTCCCCCGCCCAACTCTTAACAAGTCAATTGGAAATGGTGTGCAATTCCTCAACCGTCACCTTTCTGCCAAACTCTTCCACGACAAGGAGAGCTTGCACCCACTTTTGGAGTTCCTCAGGCTTCACAGCGTCAAGGGAAAGACTTTGATGTTGAATGACAGAATTCAAAACCCAGATGCACTCCAACATGTTCTGAGGAAAGCTGAGGAGTATCTGGGCACAGTGCCTCCTGAAACTCCCTACTCAGAATTTGAGCACAAGTTCCAGGAGATTGGTTTGGAGAGAGGGTGGGGTGACAACGCGGAGCGTGTCCTTGAGTCAATTCAACTTCTCTTGGATCTTCTTGAGGCCCCTGACCCGTGCACCCTTGAGACTTTCCTTGGAAGAATCCCTATGGTGTTCAATGTTGTTATTCTTTCTCCCCATGGTTACTTTGCCCAAGATAATGTCTTGGGATACCCTGACACTGGTGGCCAGGTTGTTTACATCTTGGATCAAGTTCGTGCTTTGGAGAATGAGATGCTCCATCGCATTAAGCAACAAGGATTGGACATTGTTCCTCGTATTCTCATTATCACCCGTCTTCTCCCCGATGCAGTAGGAACTACTTGTGGCCAACGTCTTGAGAAGGTGTTCGGAACTGAGCACTCCCACATTCTTCGAGTTCCCTTTAGAACTGAGAAGGGAATTGTTCGCAAGTGGATCTCAAGATTCGAAGTCTGGCCCTACTTGGAAACTTACACTGAGGATGTTGCCCACGAGCTTGCCAAAGAGTTGCAAGGCAAGCCAGATCTGATTGTTGGAAACTACAGTGATGGAAACATTGTCGCTTCTTTGTTGGCACATAAATTAGGTGTCACTCAGTGTACCATTGCTCACGCACTTGAGAAGACCAAATACCCCGAATCCGACATTTACTGGAAAAAATTGGAAGAGAGATACCACTTCTCTTGCCAATTCACAGCTGATCTATTTGCCATGAACCACACAGATTTCATTATCACCAGTACCTTCCAGGAGATTGCTGGAAGCAAGGACACTGTTGGACAGTACGAATCTCACACAGCCTTCACCCTTCCTGGACTCTACCGCGTTGTGCATGGTATTGATGTCTTTGATCCAAAATTCAACATTGTCTCCCCTGGAGCTGATCAAACCATTTACTTCCCCCACACTGAAACCAGCCGTAGGTTGACATCCTTCCACCCTGAAATCGAAGAACTCCTTTACAGCTCAGTGGAGAATGAAGAACACATATGTGTGCTGAAGGACCGCAGCAAGCCAATTATCTTCACCATGGCAAGGTTGGACCGAGTGAAGAACATCACAGGACTTGTGGAGTGGTACGGTAAGAACGCGAAGCTGAGGGAGCTGGTGAACCTTGTGGTTGTTGCTGGAGACAGGAGGAAGGAGTCAAAGGACTTGGAAGAGAAGGCCGAGATGAAGAAGATGTACGGCCTGATCGAGACCTACAAGTTGAACGGCCAATTCAGATGGATTTCATCGCAGATGAACCGTGTGAGGAATGGAGAGCTCTACCGCGTGATCTGCGACACCAGGGGTGCTTTCGTGCAGCCTGCTGTATACGAGGCTTTTGGTTTGACAGTGGTTGAGGCCATGACTTGCGGCTTGCCAACATTCGCCACATGCAATGGTGGTCCTGCTGAGATCATTGTGCACGGCAAGTCTGGCTTCCACATTGACCCTTACCATGGTGACCGTGCTGCTGATCTCCTTGTTGACTTCTTTGAGAAGTGCAAGCTTGACCCAACCCACTGGGACAAGATCTCAAAGGCTGGTCTCCAGCGTATTGAAGAGAAGTACACATGGCAAATTTACTCTCAGAGGCTTCTCACTCTCACCGGTGTCTATGGCTTCTGGAAGCATGTGTCTAACCTTGACCGCCGTGAGAGCCGCCGCTATCTCGAGATGTTCTATGCTCTCAAGTACCGCAAATTGGCTGAGTCTGTGCCCCTTGCTGCTGAGTAA 2418 0.4897 MATDRLTRVHSLRERLDETLTANRNEILALLSRIEAKGKGILQHHQVIAEFEEIPEENRQKLTDGAFGEVLRSTQEAIVLPPWVALAVRPRPGVWEYLRVNVHALVVEELQPAEYLHFKEELVDGSSNGNFVLELDFEPFNAAFPRPTLNKSIGNGVQFLNRHLSAKLFHDKESLHPLLEFLRLHSVKGKTLMLNDRIQNPDALQHVLRKAEEYLGTVPPETPYSEFEHKFQEIGLERGWGDNAERVLESIQLLLDLLEAPDPCTLETFLGRIPMVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLHRIKQQGLDIVPRILIITRLLPDAVGTTCGQRLEKVFGTEHSHILRVPFRTEKGIVRKWISRFEVWPYLETYTEDVAHELAKELQGKPDLIVGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPESDIYWKKLEERYHFSCQFTADLFAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADQTIYFPHTETSRRLTSFHPEIEELLYSSVENEEHICVLKDRSKPIIFTMARLDRVKNITGLVEWYGKNAKLRELVNLVVVAGDRRKESKDLEEKAEMKKMYGLIETYKLNGQFRWISSQMNRVRNGELYRVICDTRGAFVQPAVYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHIDPYHGDRAADLLVDFFEKCKLDPTHWDKISKAGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRRESRRYLEMFYALKYRKLAESVPLAAE* 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0839 805 Pfam Sucrose synthase 8 553 IPR000368 GO:0005985|GO:0016157
Gso13g0839 805 Gene3D - 146 275 - -
Gso13g0839 805 Gene3D Glycogen Phosphorylase B; 527 753 - -
Gso13g0839 805 Pfam Glycosyl transferases group 1 564 739 IPR001296 GO:0016757
Gso13g0839 805 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 295 763 - -
Gso13g0839 805 TIGRFAM sucr_synth: sucrose synthase 24 802 IPR012820 GO:0005985|GO:0016157
Gso13g0839 805 Gene3D - 25 145 - -
Gso13g0839 805 Gene3D Glycogen Phosphorylase B; 280 796 - -
Gso13g0839 805 PANTHER SUCROSE SYNTHASE 1 805 - -
Gso13g0839 805 PANTHER - 1 805 IPR012820 GO:0005985|GO:0016157
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0839 Gso-Chr13 22711995 22717418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0839 6 805 Glycosyltransferase AT3G43190 85.500 0.0 1439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0839 K00695 - gmx:547508 1625.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0839 13 22711995 22717418 Gso17g0377 17 3409171 3414653 GST
Gso13g0839 13 22711995 22717418 Gso15g1503 15 17953440 17959644 PCT
Gso13g0839 13 22711995 22717418 Gso9g0624 9 7666308 7672498 PCT
Gso15g1503 15 17953440 17959644 Gso13g0839 13 22711995 22717418 PCT
Gso9g0624 9 7666308 7672498 Gso13g0839 13 22711995 22717418 PCT