Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0731 ATGCGCTCAGGAGTTTGTGCATTACAGCAGACCCTCACAGCTGAGGCTGCTTCAGTGTTGAAGCACTCTCTGGGGTTGGCTCGGAGGAGGGGCCATGCACAGCTCACTCCTCTGCATGTGGCTGCCACTTTGCTAAGCCTTAGAGGCAGTTCCTTGAGAAGGGCTTGCCTCAAGTCTCAGCCTCACCAAACTTCTCATCATCCTCTTCAATGCAGGGCCCTTGAGTTGTGCTTCAATGTTGCCCTCAACAGGCTCCAAACAACACCTTCTCCTTTGATCCACACTCAGCCTTCTCTCTCCAATGCTCTCATTGCTGCATTGAAGAGAGCTCAGGCTCACCAGAGAAGGGGCTGCATTGAGCACCAGCAGCAACAGCCTCTGCTCACCATCAAGGTTGAGCTGGAACACCTCATCATATCAATCCTTGATGACCCTAGTGTTAGCAGGGTTATGAGAGAGGCTGGCTTCTCCAGCACTGCTGTTAAGAACAACATAGAGGACTCTTCACCTCATTCTGTTTTCCAGTGTTACAATAGTTCTGGTGGTGTGTTCTCTTCTCCTTGTTCACCTTCTGCCAGTGAGAACAACAACCATAGGGAAACAGCCACCAACCCTACCAATTTCAGACACCCTCATCATTACTTAACTTCTTATGCATCTTCTGAGTTCCACCCTTCACTTCTGTTTTCTCCACCAAAGAATAATTCACCAGTGTGTTCCATCACTGGTGCAGCTTCTTCTAGTAAGGATGATGTCAGGCTTGTTCTGGATATCCTCTTGAGGAAGAAGAAAAAGAACACCGTGATTGTTGGTGACTCACTGTCATTAACTGAAGGCCTTGTGGCAGAGCTAATGGGGAGGCTAGAAAGGTCAGAAGTGCCTGATGAGTTAAAGTCAACCCATTTTATCAAATTCCAAATTTCACATGATTCATTGAGTTGCATGAAGAGAGATGAAGTTGAAATGAAACTCTTGGAACTCAAAAGGAAGGTGGAATCCATTGCTTCAGGAGGAGGAGGGGGTGGCATTTTTTATATTGGAGACCTGAAGTGGACAGTGAAGGAGGCAAGTTTCAGTGAGAAAGAGGAAGGATCCCCAAATGGAGAAGTTTCTGGTTATAACCCTGTTGATCATCTTGTTTCAGAAATAGGGAAGTTATTCTCTGATTGTGGAACCTCAAATAATGCTAAGGTGTGGCTCATGGCCACTGCTAGCTATCAAACATACATGAGGTGTCAAATGAGGCAACCCCCTCTTGAGAAGCAATGGGCTCTTCAGGCTGTTCCTATTCCATCAGGTGGACTTGGCTTGAGTCTTCATGCTCCCAGTGTCCTTCATTCAAAGATGATTGTCTCGCATAACCAATCTCATGTGCCGGAAACAAATCCCTTTGGTAACATGGAGCAGGAGAATAAGCTCAATTGTTGTGAGGAATGTGCCTCCAATTATGAAAAAGAAGCCCAATTTCTCAGGCCCGACCAAAAGAAAATGTTGCCTCTCTGGCTTCAGTCTCATAGCACAGAAGACTCTAAGAAGGATGAATTAGTCCAATTGAAAAGAAAATGGAATAGACTATGCCACTGTCTCCACCAAAGCAAACAGCCTCAGAACCAATGGAGCTGGAACCACAACAGTTATAATTCACCAAGCTCTATATCCTTTGCCAACAATGCCACACATGGCTCCACTTCCAAACTTGTCCCTCGATTCCAGCGCCAACAATTATGCATCATTGAGTTCAATTTCGGCAACAAAAGGGAAGCAACAGAGCCAGTCTTGGATTCCCTTGAGAGCATGGACGGTAAAAAAGTAAAGACTATTCTTGCTCTTGGCAATGGTGGTTCAGGTGAGTCGACGGTGGGGGATATAACTGATACAACACTGCAACAAGCTCATATTTGTAAACTATTGCAGGAGAATGTACCATGGCAGTCTGAGACTGTTCCTTCAATAGCAGAAGCCTTGATTGATTCCAAATCAGCAAAGCAAAATAACAATATTACTTGGTTACTTGTGCAAGGCAATGACACCATTGGGAAAAGAAGGTTGGCACTTGCAATTGCAGAATCAGTTTTTGGCTCAACTGATGTGCTCCTTCACTTTGACATGCTAAAGAGAGAGACTTCAATAGCCCCATTTTCTGAAATGCTGGAAGGAGCACTGAAGACACACCACCAGCTTGTGATTCTAATAGAAAATGTTGACTTTGCTGATGCCCAGTTCAAGAAATTCCTCTCAGATGGATTTGAAAAGGGAAAGTTTGGAAATTTCACAGAAGAGAACTCAAGCCAAGTAATATTCATATTGACAAATGGTGGATGTGGATCCACTAGCAATGAAGAGCAGAATGATAACTTGGTTATGAGGTTGTTGTGGCAGGTCAGTGAAACCAAGCCTAACTCAGAGACGCCATCTGTGGCAACCAGGATCGCGGAGCCTTGTTTAGGCCACAAGAGAAGAGCTGAACTTGATTTGTTTTCTAACACCAACAGTTCTCAAGGGAGCAAGAAGAAACAGTTTTCAAGACAAACAAGCTTTAACACTCTTGATCTGAACATGAAAGCTGATGAAGAGGATAAAGCAGGAGAGAGTAGCCCCATTTCAAGTGATTTGACTGGAGAAACTATAGCTGATCCGTTGAACCAAAATGGGTTTCTTGACTCAAATGTGAACCGGTTTGAGTTTAACACAAATCCAGTTAAGGACAGAGAGATGGCAGAGTTGTTTCTGTGTAAGTTCAAAGGGTCTTTTGAGGAGGTTTGTGGGAAGCAATGTTGGGAGAATTTAAGTGTAGATGAGAGGGTGATTGAGGATGTGAGTGTTGGGTGTGGTTATTTTACCAACAGCTTGTTTGAGAAATGGCTGAAAGACGTTTTTCAAAGCAGTTTAGAAACAGTTAACTTTGGAGGGAAGGAGGGTATACTTTTAAGACTTTCTTGGGAGGGTAAAGGAGATAGAAAATCGGATAGTGGGTTCATGAGTTCTTCTCTGCCCAAGAGTATCCAAGTTAATTACTTCATAGAGTGA 3027 0.4407 MRSGVCALQQTLTAEAASVLKHSLGLARRRGHAQLTPLHVAATLLSLRGSSLRRACLKSQPHQTSHHPLQCRALELCFNVALNRLQTTPSPLIHTQPSLSNALIAALKRAQAHQRRGCIEHQQQQPLLTIKVELEHLIISILDDPSVSRVMREAGFSSTAVKNNIEDSSPHSVFQCYNSSGGVFSSPCSPSASENNNHRETATNPTNFRHPHHYLTSYASSEFHPSLLFSPPKNNSPVCSITGAASSSKDDVRLVLDILLRKKKKNTVIVGDSLSLTEGLVAELMGRLERSEVPDELKSTHFIKFQISHDSLSCMKRDEVEMKLLELKRKVESIASGGGGGGIFYIGDLKWTVKEASFSEKEEGSPNGEVSGYNPVDHLVSEIGKLFSDCGTSNNAKVWLMATASYQTYMRCQMRQPPLEKQWALQAVPIPSGGLGLSLHAPSVLHSKMIVSHNQSHVPETNPFGNMEQENKLNCCEECASNYEKEAQFLRPDQKKMLPLWLQSHSTEDSKKDELVQLKRKWNRLCHCLHQSKQPQNQWSWNHNSYNSPSSISFANNATHGSTSKLVPRFQRQQLCIIEFNFGNKREATEPVLDSLESMDGKKVKTILALGNGGSGESTVGDITDTTLQQAHICKLLQENVPWQSETVPSIAEALIDSKSAKQNNNITWLLVQGNDTIGKRRLALAIAESVFGSTDVLLHFDMLKRETSIAPFSEMLEGALKTHHQLVILIENVDFADAQFKKFLSDGFEKGKFGNFTEENSSQVIFILTNGGCGSTSNEEQNDNLVMRLLWQVSETKPNSETPSVATRIAEPCLGHKRRAELDLFSNTNSSQGSKKKQFSRQTSFNTLDLNMKADEEDKAGESSPISSDLTGETIADPLNQNGFLDSNVNRFEFNTNPVKDREMAELFLCKFKGSFEEVCGKQCWENLSVDERVIEDVSVGCGYFTNSLFEKWLKDVFQSSLETVNFGGKEGILLRLSWEGKGDRKSDSGFMSSSLPKSIQVNYFIE* 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0731 1008 Gene3D - 617 812 IPR027417 -
Gso13g0731 1008 SUPERFAMILY Double Clp-N motif 12 166 IPR036628 -
Gso13g0731 1008 Coils Coil 466 486 - -
Gso13g0731 1008 ProSiteProfiles Clp repeat (R) domain profile. 8 171 IPR004176 -
Gso13g0731 1008 MobiDBLite consensus disorder prediction 188 208 - -
Gso13g0731 1008 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 972 - -
Gso13g0731 1008 Gene3D - 9 169 IPR036628 -
Gso13g0731 1008 Pfam Clp amino terminal domain, pathogenicity island component 132 167 IPR004176 -
Gso13g0731 1008 Pfam Clp amino terminal domain, pathogenicity island component 26 53 IPR004176 -
Gso13g0731 1008 PANTHER PROTEIN SMAX1-LIKE 5 1 972 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0731 Gso-Chr13 21587044 21591289 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0731 - - gmx:100814376 2005.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0731 13 21587044 21591289 Gso17g0490 17 4435728 4439909 GST
Gso13g0731 13 21587044 21591289 Gso15g1372 15 14699731 14704485 PCT
Gso13g0731 13 21587044 21591289 Gso9g0512 9 5584215 5588941 PCT
Gso15g1372 15 14699731 14704485 Gso13g0731 13 21587044 21591289 PCT
Gso9g0512 9 5584215 5588941 Gso13g0731 13 21587044 21591289 PCT