Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0710 ATGTCCGTTTCCATGAGAGATCTGGATCCAGCTTTCAAGGGAGCTGGACAAAAGGCCGGATTGGAAATATGGCGTATCGAGAATTTTAATCCAGTTGCCATCCCTCAGTCATCTTATGGAAAGTTTTTCACTGGGGACTCCTATGTGATCTTGAAGACAACTGCTTCAAAAAGTGGTGCTCTTCGTCATGATATCCATTATTGGCTTGGTAAAGACACCAGTCAGGATGAAGCTGGCGCCGCAGCCATCAAGACAGTCGAGTTGGATGCAGCTTTAGGAGGACGGGCTGTTCAGTATCGTGAAGTACAAGGTCATGAAACTGAAAAGTTCCTCTCTTATTTCAAACCATGCATCATACCTCAAGAAGGTGGGGCTGCCTCAGGTTTTAAGCATGTTGAGGCTGAAGAACATAAGACACGGTTGTTTGTGTGCAAAGGGAAACATGTGGTACATGTCAAAGAGATTTCTTTCGCTCGATCTTCACTGAACCATGATGATATTTTTATTCTGGATACCGAGTCCAAAATTTTCCAATTTAATGGTTCCAATTCAAGTATTCAAGAAAGGGCTAAAGCATTGGAAGTTGTACAATATATCAAGGATACCTACCATGATGGGAAATGTGAGATAGCTTCTATTGAGGATGGAAAGTTGATGGCTGATTCTGAGAGTGGAGAATTCTGGGGTTGCTTTGGGGGCTTTGCTCCTCTTCCACGGAGAACAGTCAGTGATGATGACAAGCCTGCTGATTCTCATCCTCCAAAGCTACTTTGTGTTGACAAGGGGAAAGCAGAACCAATTGAATCCGATTCTTTGACAAAGGAATTACTGGACACAAACAAATGTTATATTCTAGATTGTGGGTTGGAAGTTTTTGCATGGATGGGAAGAAACACATCTCTTGATGAAAGAAAAAGTGCAAGTGGAGCAGCAGATGAGTTAATCAGTGGCACTGGTCGACCAAAGTCCCATATAATTCGTGTAATTGAAGGATTTGAAACAGTAATGTTCAAGTCCAAGTTTGATTCTTGGCCTCAGGCATGTCATGCAACAATGTCTGAAGAAGGTCGTGGCAAGGTAGCAGCACTTCTAAAACGTCAAGGATTGGATGTCAAGGGTCTCGTGAAATCTGAGCCCGAAAAAGAAGAACCTCAACCCCACATAGATTGCACAGGACATTTGCAGGTTTGGTGTGTGAATGGTCAGGAAAAGATTCTTCTTCCAGCCACTGATCAGTCAAAATTTTATAATGGAGATTGCTACATCTTTCAATATTCATATCCTGGAGAAGATAAGGAAGAGTATCTTATAGGAACATGGGTTGGAAAGAATAGTGTTGAGGAAGAGAGAGCTTCAGCTCTTTCACTAGCAAGCAAAATGGTTGAGTCAATGAAGTTTCTTCCTTCCCAGGCTCGTATCTATGAAGGCAGTGAACCAATTCAATTTCATGCCATCCTGCAAAGCTGTATTGTTTTTAAGGGTGGACGTAGTGATGGATACAAGAATTACATTGCGGAGAAGGAAATTCCAGATGAGACATACAATGAGGATGGTGTTGCATTATTCCGCATCCAGGGCACTGGACCAGACAATATGCAAGCTATACAAGTTGAACCAGTTGCTTCCTCCTTGAATTCCGCTTATTGCTTCATACTTCATAGCGGGCCCACTGTTTTTATTTGGTCTGGAGGTTTAGCAACTTCAGATGACCAGGAGCTTGTTGAGAGAATGCTGGATTTGATTAAGCCGGATGTACAATGCAAACCACTAAAGGAAGGCCTAGAACCGGAACAGTTTTGGGATTTGTTGGGGGGAAAAACGGAATATCCCAGTCAAAAGATCACGAGGGAAGCTGAAAATGATCCTCATTTATTTTCTTGCAACTTCTCAGAAGGAAATTTAAAGGTGAAAGAGATTCACAACTTTTCCCAGGATGATTTGATGACAGAAGATATTTACACCTTGGATTGTCACTCGGAAATCTTTGTTTGGGTTGGCCAGCAGGTTGACTCAAAGAGTAGAATGCAGGCTCTAACAATTGGCGAGAAGTTTCTTGAGCATGATTTTCTCCTAGAAGGATTATCTCGTGAAGCTCCAATATATATTGTCAAAGAAGGTAGTGAGCCACCTTTCTTCACTCGCTTCTTTAAATGGGAGTCTGCAAAATCTGCAATGCTAGGAAACTCATTTCAAAGGAAGCTTGCAATCGTGAAAAATGGGGGTACACCACTTATGGTTAAACACAAACGAAGAGCATCAGTAACTTATGGGGGAAGGTCTAGTGGTGCCCCAGATAAATCCCAGCGTTCCCGTAGCATGTCTGTCAGTCCTGATCGTGTTCGTGTGAGGGGCAGATCTCCGGCCTTTAATGCACTAGCAGCTAATTTTGAGAGCTCAAATGCAAGGAACCTTTCAACTCCACCTCCGATGATTAGAAAACTTTACCCAAAATCTATGGCACAGGATACAGCAAAATTGGCAACTAAATCTTCAGCCATAGCTCATCTTACTTCTAGTTTTGAACCAACATCAGCACGAGAAAATTTGATTCCTCGGTCACAAAAAGCGAGTTCAGTTACCCCCAAATCAAACCCTGAGACAAGTGATGAGGAGGGTTCTTTGAGCAGCAGGATAGAATCTCTTACCATACAGGAGGATGCGAAAGAGGGTGAAGCTGAAGACGATGAAGGTCTCCCAGTTTACCCGTATGAACGCGTTAACACAGCTTCTACAGATCCTGTAGAAGATATTGACGTGACTAAACGAGAGGCTTATCTGTCATCTGCAGAGTTTCAAGAGAAATTTGGGATGGCGAAGAATGAATTTTACAAGTTGCCAAAATGGAAACAGAACAAACTCAAAATGGCAGTTCAGTTGTTCTGA 2883 0.4253 MSVSMRDLDPAFKGAGQKAGLEIWRIENFNPVAIPQSSYGKFFTGDSYVILKTTASKSGALRHDIHYWLGKDTSQDEAGAAAIKTVELDAALGGRAVQYREVQGHETEKFLSYFKPCIIPQEGGAASGFKHVEAEEHKTRLFVCKGKHVVHVKEISFARSSLNHDDIFILDTESKIFQFNGSNSSIQERAKALEVVQYIKDTYHDGKCEIASIEDGKLMADSESGEFWGCFGGFAPLPRRTVSDDDKPADSHPPKLLCVDKGKAEPIESDSLTKELLDTNKCYILDCGLEVFAWMGRNTSLDERKSASGAADELISGTGRPKSHIIRVIEGFETVMFKSKFDSWPQACHATMSEEGRGKVAALLKRQGLDVKGLVKSEPEKEEPQPHIDCTGHLQVWCVNGQEKILLPATDQSKFYNGDCYIFQYSYPGEDKEEYLIGTWVGKNSVEEERASALSLASKMVESMKFLPSQARIYEGSEPIQFHAILQSCIVFKGGRSDGYKNYIAEKEIPDETYNEDGVALFRIQGTGPDNMQAIQVEPVASSLNSAYCFILHSGPTVFIWSGGLATSDDQELVERMLDLIKPDVQCKPLKEGLEPEQFWDLLGGKTEYPSQKITREAENDPHLFSCNFSEGNLKVKEIHNFSQDDLMTEDIYTLDCHSEIFVWVGQQVDSKSRMQALTIGEKFLEHDFLLEGLSREAPIYIVKEGSEPPFFTRFFKWESAKSAMLGNSFQRKLAIVKNGGTPLMVKHKRRASVTYGGRSSGAPDKSQRSRSMSVSPDRVRVRGRSPAFNALAANFESSNARNLSTPPPMIRKLYPKSMAQDTAKLATKSSAIAHLTSSFEPTSARENLIPRSQKASSVTPKSNPETSDEEGSLSSRIESLTIQEDAKEGEAEDDEGLPVYPYERVNTASTDPVEDIDVTKREAYLSSAEFQEKFGMAKNEFYKLPKWKQNKLKMAVQLF* 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0710 960 SUPERFAMILY Actin depolymerizing proteins 9 147 - -
Gso13g0710 960 Gene3D Villin headpiece domain 898 960 IPR036886 GO:0003779|GO:0007010
Gso13g0710 960 Gene3D Severin 247 357 IPR029006 -
Gso13g0710 960 PRINTS Gelsolin family signature 323 344 IPR007122 GO:0051015
Gso13g0710 960 PRINTS Gelsolin family signature 411 427 IPR007122 GO:0051015
Gso13g0710 960 PRINTS Gelsolin family signature 436 454 IPR007122 GO:0051015
Gso13g0710 960 PRINTS Gelsolin family signature 469 489 IPR007122 GO:0051015
Gso13g0710 960 PRINTS Gelsolin family signature 532 552 IPR007122 GO:0051015
Gso13g0710 960 PRINTS Gelsolin family signature 592 611 IPR007122 GO:0051015
Gso13g0710 960 PRINTS Gelsolin family signature 644 666 IPR007122 GO:0051015
Gso13g0710 960 PRINTS Gelsolin family signature 673 692 IPR007122 GO:0051015
Gso13g0710 960 CDD gelsolin_S5_like 517 608 - -
Gso13g0710 960 MobiDBLite consensus disorder prediction 838 878 - -
Gso13g0710 960 Gene3D Severin 388 502 IPR029006 -
Gso13g0710 960 MobiDBLite consensus disorder prediction 760 775 - -
Gso13g0710 960 SUPERFAMILY Actin depolymerizing proteins 129 243 - -
Gso13g0710 960 SUPERFAMILY Actin depolymerizing proteins 382 528 - -
Gso13g0710 960 Pfam Gelsolin repeat 411 481 IPR007123 -
Gso13g0710 960 Pfam Gelsolin repeat 29 111 IPR007123 -
Gso13g0710 960 Pfam Gelsolin repeat 150 216 IPR007123 -
Gso13g0710 960 Pfam Gelsolin repeat 269 337 IPR007123 -
Gso13g0710 960 Pfam Gelsolin repeat 637 712 IPR007123 -
Gso13g0710 960 Gene3D Severin 133 246 IPR029006 -
Gso13g0710 960 CDD gelsolin_S6_like 621 718 - -
Gso13g0710 960 SMART VILL_6 519 606 IPR007122 GO:0051015
Gso13g0710 960 SMART VILL_6 137 234 IPR007122 GO:0051015
Gso13g0710 960 SMART VILL_6 392 489 IPR007122 GO:0051015
Gso13g0710 960 SMART VILL_6 19 117 IPR007122 GO:0051015
Gso13g0710 960 SMART VILL_6 254 344 IPR007122 GO:0051015
Gso13g0710 960 SMART VILL_6 623 719 IPR007122 GO:0051015
Gso13g0710 960 CDD gelsolin_S4_like 388 485 - -
Gso13g0710 960 PANTHER VILLIN-4 1 960 - -
Gso13g0710 960 Gene3D Severin 7 132 IPR029006 -
Gso13g0710 960 SUPERFAMILY Actin depolymerizing proteins 595 717 - -
Gso13g0710 960 SUPERFAMILY VHP, Villin headpiece domain 886 960 IPR036886 GO:0003779|GO:0007010
Gso13g0710 960 SMART VHP_1 925 960 IPR003128 GO:0003779|GO:0007010
Gso13g0710 960 Pfam Villin headpiece domain 925 960 IPR003128 GO:0003779|GO:0007010
Gso13g0710 960 MobiDBLite consensus disorder prediction 751 782 - -
Gso13g0710 960 PANTHER VILLIN 1 960 IPR007122 GO:0051015
Gso13g0710 960 CDD gelsolin_S3_like 254 343 - -
Gso13g0710 960 Gene3D Severin 517 612 IPR029006 -
Gso13g0710 960 Gene3D Severin 613 735 IPR029006 -
Gso13g0710 960 SUPERFAMILY Actin depolymerizing proteins 223 347 - -
Gso13g0710 960 CDD gelsolin_S1_like 12 124 - -
Gso13g0710 960 CDD gelsolin_S2_like 138 232 - -
Gso13g0710 960 ProSiteProfiles Headpiece (HP) domain profile. 895 960 IPR003128 GO:0003779|GO:0007010
Gso13g0710 960 SUPERFAMILY Actin depolymerizing proteins 511 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0710 Gso-Chr13 21325124 21334889 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0710 - - gmx:100807762 1911.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0710 13 21325124 21334889 Gso17g0512 17 4666015 4679320 GST
Gso13g0710 13 21325124 21334889 Gso15g1667 15 25405359 25408532 PCT
Gso15g1344 15 14099590 14112842 Gso13g0710 13 21325124 21334889 PCT
Gso9g0485 9 5105756 5125958 Gso13g0710 13 21325124 21334889 PCT