Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1839 ATGGCTGCACAACGAAACTTCCAAGACTACTTGCCTGTGATGGCCAACAAGCTTGGTGGGGATGGCCTAATTGATGAACTGTGCAATGGGTTCAATCTGTTGAAGGATTCTGATAAAGGGGTCATCACCTTTGAGAGCCTCAAGAGGAACTCTGCCTTGTTTGGCCTTCAGGGTCTTAGTGATGAAGATCTTCGGTCCATGGTTTTGGAAGGTGACTTTGATGGTGATGGTGCACTCAATCAGTTGGAGTTCTGTGTTTTGATGTTCAGACTCAGCCCTGAATTGATGGAGGGCTCAAAGATGTGGCTTGAACAAGTCCTTCAACAAGAGCTTAAGGATTATTTCTAA 348 0.454 MAAQRNFQDYLPVMANKLGGDGLIDELCNGFNLLKDSDKGVITFESLKRNSALFGLQGLSDEDLRSMVLEGDFDGDGALNQLEFCVLMFRLSPELMEGSKMWLEQVLQQELKDYF* 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1839 115 Pfam EF-hand domain pair 39 90 IPR002048 GO:0005509
Gso12g1839 115 PANTHER CALCIUM-BINDING PROTEIN KRP1 3 114 - -
Gso12g1839 115 Gene3D - 4 114 - -
Gso12g1839 115 PANTHER CALCIUM-BINDING PROTEIN KIC 3 114 IPR044205 GO:0005509
Gso12g1839 115 ProSitePatterns EF-hand calcium-binding domain. 72 84 IPR018247 -
Gso12g1839 115 ProSiteProfiles EF-hand calcium-binding domain profile. 59 94 IPR002048 GO:0005509
Gso12g1839 115 SUPERFAMILY EF-hand 6 88 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1839 Gso-Chr12 42124218 42124838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1839 3 111 EF-hand Containing Proteins AT4G27280 64.545 8.02e-48 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1839 K24345 - gmx:100500465 233.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1839 12 42124218 42124838 Gso11g3022 11 46099667 46100247 GST
Gso12g1839 12 42124218 42124838 Gso12g1180 12 18593195 18593848 PCT
Gso12g1180 12 18593195 18593848 Gso12g1839 12 42124218 42124838 PCT