Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3022 ATGGCTGCACAAGAAAACAACTTCCAAGACTACTTGCCTGTGATGGCCAACAAGCTTGGTGGGGATGGCCTAATTGATGAACTGTGCAATGGGTTCAATCTTTTGAAGGATTCTGATAAAGGGGTCATCACTTTTGAGAGCCTCAAGAGGAATTCTTACTTGCTTGGTCTTCAGGGTCTCAGTGATGAGGATCTTCGCTCCATGGTTTTGGAAGGTGACTTTGATGGTGACGGTGCACTCAACCAGATGGAGTTCTGTGTCTTGATGTTCAGACTCAGCCCTGAATTGATGGAGGGCTCAAAGATGTGGCTTGAACAAGTCCTTCAACAAGAGCTTAAAGATTATTTCTAA 351 0.4473 MAAQENNFQDYLPVMANKLGGDGLIDELCNGFNLLKDSDKGVITFESLKRNSYLLGLQGLSDEDLRSMVLEGDFDGDGALNQMEFCVLMFRLSPELMEGSKMWLEQVLQQELKDYF* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3022 116 ProSitePatterns EF-hand calcium-binding domain. 73 85 IPR018247 -
Gso11g3022 116 PANTHER CALCIUM-BINDING PROTEIN KRP1 4 115 - -
Gso11g3022 116 Pfam EF-hand domain pair 40 91 IPR002048 GO:0005509
Gso11g3022 116 Gene3D - 5 115 - -
Gso11g3022 116 ProSiteProfiles EF-hand calcium-binding domain profile. 60 95 IPR002048 GO:0005509
Gso11g3022 116 PANTHER CALCIUM-BINDING PROTEIN KIC 4 115 IPR044205 GO:0005509
Gso11g3022 116 SUPERFAMILY EF-hand 7 89 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3022 Gso-Chr11 46099667 46100247 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3022 4 112 EF-hand Containing Proteins AT5G54490 66.364 9.09e-49 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3022 K24345 - gmx:100306396 234.572
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1839 12 42124218 42124838 Gso11g3022 11 46099667 46100247 GST
Gso11g3022 11 46099667 46100247 Gso12g1180 12 18593195 18593848 PCT
Gso12g1180 12 18593195 18593848 Gso11g3022 11 46099667 46100247 PCT