Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1709 ATGAGTAGCTACGACATCAACCCCTTTGCCGAAGACGAGGTTAATCCTTTCGCTGATGGAACTGCTAAAGGAAAAGCATCGGGGCAATCAAATCATGGTGGTGGTGCAGCATCAAAGCTTTCACCCCTGTCTCCTGAGCCTTATGATTGTGCAGCAACTGTTGACATTCCTCTTGATTCCTCAAAGGACCTCAAAGCCAAGGAGAAGGAGCTCCAAGCTAGAGAGGCTGAATTGAAAAGAAGGGAACAGGAGCTAAAACGAAGGGAAGATGCTATAGCACGAGCTGGAATTGTTATAGAGGAGAAAAATTGGCCACCTTTTTGCCCCATCATTCATCACGACATTGCAAATGAAATACCTATACATCTTCAATCAATCCAGTATGTAGCATTTACAACATGGTTAGGTTTGGTTGTATGTCTTTTATGGAATATTGCAGCAGTTACTGTAGCTTGGATCAAAGGAGAAGGTCTTTCAATCTGGTTCCTATCTATCATATACTTTATTTCCGGTGTTCCAGCATCCTATGTGATGTGGTATCGCCCTCTTTATCGTGCGACAAGGACGGATAGTGCTCTAAGGTTTAGCTGGTTTTTCTTGTCTTACGGAGTGCACATTCTCTTTTGTGTTTTTGCTACAATTGCTCCTCCAATTGTCTTCAAAGGGAAATCTCTCACAGGTATTCTGCCTGCGTTTGAGGTATTGGACTACAATGGATTGGTTGGGATACTCTACTTTATTGGGTTTGGTTTTTTCTGCATTGAATCACTGCTGAGCATTTGGGTTATTCAGCAAGTATACATGTACTTCCGGGGCAGTGGAAAGGCTGCAGCGATGAGGCGTGAAGCTGCGCAAGGGGCCATGAGGGCAGCTCTATGA 879 0.4414 MSSYDINPFAEDEVNPFADGTAKGKASGQSNHGGGAASKLSPLSPEPYDCAATVDIPLDSSKDLKAKEKELQAREAELKRREQELKRREDAIARAGIVIEEKNWPPFCPIIHHDIANEIPIHLQSIQYVAFTTWLGLVVCLLWNIAAVTVAWIKGEGLSIWFLSIIYFISGVPASYVMWYRPLYRATRTDSALRFSWFFLSYGVHILFCVFATIAPPIVFKGKSLTGILPAFEVLDYNGLVGILYFIGFGFFCIESLLSIWVIQQVYMYFRGSGKAAAMRREAAQGAMRAAL* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1709 292 Coils Coil 61 91 - -
Gso12g1709 292 PANTHER SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN 1 292 - -
Gso12g1709 292 MobiDBLite consensus disorder prediction 1 44 - -
Gso12g1709 292 Pfam SCAMP family 101 272 IPR007273 GO:0015031|GO:0016021
Gso12g1709 292 PANTHER SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP 1 292 IPR007273 GO:0015031|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1709 Gso-Chr12 40671199 40676461 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1709 54 292 Miscellaneous Gene Families AT2G20840 80.335 2.88e-134 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1709 K19995 - gmx:100820206 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1709 12 40671199 40676461 Gso11g3156 11 47425621 47431039 GST
Gso12g1709 12 40671199 40676461 Gso12g0887 12 9956783 9963693 PCT
Gso12g1709 12 40671199 40676461 Gso6g2437 6 46064778 46071344 PCT
Gso12g0887 12 9956783 9963693 Gso12g1709 12 40671199 40676461 PCT
Gso6g2437 6 46064778 46071344 Gso12g1709 12 40671199 40676461 PCT