Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0887 ATGAGTCGCTACGATCCCAATCCCTTCGACGAAGAACCAATCGAGGTTAATCCATTCGCGGATGGAACAGCTAAAGGAAAAGGGTCAGGGCAATCAAGTTATAGTGGAGGTGCATTTTATACTACTAACACTGGAAGTGTTCCCTCTGCAAACTCAAGGCTCTCGCCCCTTCCTCCAGAGCCTTACGATCGTGGGGCAACTATTGACATCCCCCTTGATAATGCAAAGGACATAAAAGCAAAGGAGAAGGAACTTCAAGCTAAAGAGGCTGAATTGAAAAGAAGGGAACAGGAACTAAAACGAAGGGAAGATGCTATAGCACGAGCTGGAATAGTTATAGAGGAGAAAAATTGGCCACCTTTTTTTCCCATCATTCATCATGACATTGCAAAGGAAATACCAATACATCTTCAAAGGATCCAGTACATTGCATTTACAACATGGTTGGGTTTGGTTCTGTGTCTTTTATGGAATATTGTGGCAGTTACTACTGCTTGGATCAAAGGAGAAGGTCCAACCATCTGGTTTCTTGCAATTATCTATTTTATTTCTGGTGCTCCAGGATCCTATGTGTTGTGGTATCGCCCTCTTTATCGTGCTATGAGGACTGACAGTGCTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATGTTGCACATTGCCTTTTGCATTTTAGCGGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATCTCTCACAGGCATTTTGGCTGCGATTGACGTGTTGGGCGACAATGCATTGGTTGGGATATTCTACTTCATTGGATTTGGCTTTTTTTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAGCAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTACAGTTTTAAAACGTGAGGCTGCCAGAGGCACAATGATGGCAGCTCTATGA 921 0.4354 MSRYDPNPFDEEPIEVNPFADGTAKGKGSGQSSYSGGAFYTTNTGSVPSANSRLSPLPPEPYDRGATIDIPLDNAKDIKAKEKELQAKEAELKRREQELKRREDAIARAGIVIEEKNWPPFFPIIHHDIAKEIPIHLQRIQYIAFTTWLGLVLCLLWNIVAVTTAWIKGEGPTIWFLAIIYFISGAPGSYVLWYRPLYRAMRTDSALKFGWFFLLYMLHIAFCILAAVAPPIIFKGKSLTGILAAIDVLGDNALVGIFYFIGFGFFCLESVLSIWVIQQVYMYFRGSGKATVLKREAARGTMMAAL* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0887 306 PANTHER SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP 1 306 IPR007273 GO:0015031|GO:0016021
Gso12g0887 306 Coils Coil 75 105 - -
Gso12g0887 306 MobiDBLite consensus disorder prediction 1 68 - -
Gso12g0887 306 PANTHER SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN 1 306 - -
Gso12g0887 306 MobiDBLite consensus disorder prediction 26 53 - -
Gso12g0887 306 Pfam SCAMP family 115 286 IPR007273 GO:0015031|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0887 Gso-Chr12 9956783 9963693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0887 2 278 Miscellaneous Gene Families AT1G61250 71.886 8.65e-146 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0887 K19995 - gmx:100796729 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0887 12 9956783 9963693 Gso12g0887 12 9956783 9963693 ECH
Gso12g0887 12 9956783 9963693 Gso6g2437 6 46064778 46071344 GST
Gso12g1709 12 40671199 40676461 Gso12g0887 12 9956783 9963693 PCT
Gso11g3156 11 47425621 47431039 Gso12g0887 12 9956783 9963693 PCT
Gso12g0887 12 9956783 9963693 Gso12g1709 12 40671199 40676461 PCT
Gso12g0887 12 9956783 9963693 Gso11g3156 11 47425621 47431039 PCT