Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1578 ATGATTTCACCGCAAACCAGACATTCCTTCGGTTCACTCTTGCTCCTTTTCCTCGTGTTGTTGCAGAAGCGATTCCAAATGGGCTTGCTAGAAGAAAACCCTAATCATTCCAAGACCATCCTGATCCGCGAGGTCTGGGCATCCAACCTCGAATCCGAATTCCAGCTGATTCGTCAAGTCATCGATGATTACCCTTTCATTTCCATGGACACCGAATTCCCCGGCGTCGTTTTCCGTCCCCACACTGTAGACCCCACAAAACCCTACCTCCCACCTTCCGTCCACTACCGCTTTCTCAAGTCCAACGTTGATGCACTTAACCTGATCCAGATCGGTCTCACTCTCTCTGATTCCAACGGAAATCTCCCCCACCTCGGAACCGCCAACCGCTTCATCTGGGAATTCAACTTCCGTGACTTCGACGTGGAGCGTGACGCCCACGCGCCTGACTCCATCGATCTCCTCCGCCGCCAGGGAATCGACTTCCGCCGCAACGCGGCGGAGGGCGTCGACTCCTACCTGTTCGCCGAACTCGTGATGTCCTCGGGACTCGTCTGCAACGACTCGGTGAGTTGGGTGACGTTTCACAGCGCGTACGATTTCGGGTACTTGGTTAAGATCCTGACCCGGCGGAGCCTGCCGAGCGGGTTGGAGGAGTTCTTGAACATGTTGAGGGCGTTTTTCGGGAACAACGTTTACGACATAAAGCACATGATGCGGTTCTGCGACACGCTCCATGGCGGTCTGGACCGGCTCGCGCGAACCCTAAACGTGGACCGGGCCGTTGGGAAATGCCACCAGGCCGGGTCTGATAGCTTGCTGACGTGGCACGCGTTTCAGAAAATGAGGGATATTTATTTCGTGACGGATGGGCCCCAGAAACATGCCGGTGTTTTGTTTGGATTGGAGCTCACTTGCTCAACCAGTTGA 930 0.5495 MISPQTRHSFGSLLLLFLVLLQKRFQMGLLEENPNHSKTILIREVWASNLESEFQLIRQVIDDYPFISMDTEFPGVVFRPHTVDPTKPYLPPSVHYRFLKSNVDALNLIQIGLTLSDSNGNLPHLGTANRFIWEFNFRDFDVERDAHAPDSIDLLRRQGIDFRRNAAEGVDSYLFAELVMSSGLVCNDSVSWVTFHSAYDFGYLVKILTRRSLPSGLEEFLNMLRAFFGNNVYDIKHMMRFCDTLHGGLDRLARTLNVDRAVGKCHQAGSDSLLTWHAFQKMRDIYFVTDGPQKHAGVLFGLELTCSTS* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1578 309 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 35 304 IPR039637 GO:0004535|GO:0030014
Gso12g1578 309 Gene3D - 30 305 IPR036397 GO:0003676
Gso12g1578 309 Pfam CAF1 family ribonuclease 45 173 IPR006941 -
Gso12g1578 309 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED 35 304 - -
Gso12g1578 309 SUPERFAMILY Ribonuclease H-like 42 301 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1578 Gso-Chr12 39270995 39272154 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1578 K12581 - gmx:100817875 626.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1578 12 39270995 39272154 Gso11g3272 11 48549867 48551028 GST
Gso12g1578 12 39270995 39272154 Gso12g0759 12 7648083 7649098 PCT
Gso12g1578 12 39270995 39272154 Gso11g1353 11 15267882 15268873 PCT
Gso12g0759 12 7648083 7649098 Gso12g1578 12 39270995 39272154 PCT
Gso11g1353 11 15267882 15268873 Gso12g1578 12 39270995 39272154 PCT