Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1353 ATGGGCGTCTTCAGCGAAAACCCGAATCCGGACCCGGTTGTGATCCGCCAGGTTTGGGCTTCAAATCTCGAATCCGAATTCCAACTCATCCGCGAACTCATCGACCACTATCCTTTTATCTCGATGGACACAGAATTCCCCGGTGTTGTTTTCCGACCACACCTGGACCCCACAAAACCCTACAACCACCGCAACAACAATCGCAACCGCCACTCCGACCACTACCGCCTCCTCAAGTCCAACGTCGACGCTCTCAACCTCATCCAGGTCGGCCTCACTCTCACCGACGCCGCCGGCAACCTTCCCGATCTCGCCGGAAACCGCTCCATCTGGGAATTCAACTTCCGTGACTTCGACGTTGCGCGTGACGCCTACGCGCTGGACTCCATCGATCTCCTCCGCCGTCAAGGAATCGATTTCGCGCGTAACGCCACCGACGGCGTAGACTCCACGCGCTTCGCTGAACTCATGATGTCTTCGGGACTCGTCTGCAACGATTCCGTGAGCTGGGTGACGTTTCACAGCGCGTACGATTTCGGTTACTTGGTGAAGATCTTGACGCGCCGTAACTTACCGACGCGGTTGGAAGAATTCTTGAAAACCGTGAAGGTGTTTTTTGGGGACAACGTTTATGATGTCAAGCACATGATGAGGTTCTGTGACACGCTCTACGGCGGATTGGACCGCGTCGCACGGACGCTTAACGTGGAACGCGCCGTAGGGAAGTGCCACCAGGCTGGGTCAGACAGCTTGCTGACGTGGCACGCGTTCCAGAAGATTGTTGACATTTATTTTGTAAAGGATGAGCACCGAAAACACGCCGGTGTATTGTATGGACTAGAGGTCTTCTGTTAA 855 0.5485 MGVFSENPNPDPVVIRQVWASNLESEFQLIRELIDHYPFISMDTEFPGVVFRPHLDPTKPYNHRNNNRNRHSDHYRLLKSNVDALNLIQVGLTLTDAAGNLPDLAGNRSIWEFNFRDFDVARDAYALDSIDLLRRQGIDFARNATDGVDSTRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTRRNLPTRLEEFLKTVKVFFGDNVYDVKHMMRFCDTLYGGLDRVARTLNVERAVGKCHQAGSDSLLTWHAFQKIVDIYFVKDEHRKHAGVLYGLEVFC* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1353 284 Pfam CAF1 family ribonuclease 18 149 IPR006941 -
Gso11g1353 284 Gene3D - 3 283 IPR036397 GO:0003676
Gso11g1353 284 SUPERFAMILY Ribonuclease H-like 14 280 IPR012337 -
Gso11g1353 284 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10 283 IPR039637 GO:0004535|GO:0030014
Gso11g1353 284 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED 10 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1353 Gso-Chr11 15267882 15268873 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1353 K12581 - gmx:100500357 573.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1353 11 15267882 15268873 Gso11g1353 11 15267882 15268873 ECH
Gso12g0759 12 7648083 7649098 Gso11g1353 11 15267882 15268873 GST
Gso12g1578 12 39270995 39272154 Gso11g1353 11 15267882 15268873 PCT
Gso11g3272 11 48549867 48551028 Gso11g1353 11 15267882 15268873 PCT
Gso11g1353 11 15267882 15268873 Gso12g1578 12 39270995 39272154 PCT
Gso11g1353 11 15267882 15268873 Gso11g3272 11 48549867 48551028 PCT